JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
P2RX6_chr22_21010165_21033008	0/0	t0011	1402	3	2	1	0	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0012	1402	3	1	0	0	0	2	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0013	1402	3	0	0	1	0	2	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0014	1392	2	2	0	0	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0015	1402	1	1	0	0	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0016	1402	1	0	1	0	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0017	1402	1	0	0	1	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0018	1402	1	1	0	0	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0019	1402	1	0	0	1	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0020	1402	1	0	1	0	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0021	1392	1	1	0	0	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0022	1402	1	1	0	0	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0023	1402	1	0	0	1	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX6_chr22_21010165_21033008	0/0	t0024	1402	1	1	0	0	0	0	copy fasta	P2RX6	chr22	21010165	21033008
P2RX7_chr12_121127876_121193032	0/1	t0001	3326	154	18	28	82	9	16	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0002	3326	46	11	11	19	1	4	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	1/0	t0003	3326	32	19	2	8	1	1	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0004	3326	30	14	1	13	1	1	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0005	3326	23	13	6	0	1	3	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0006	3326	20	0	0	20	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0007	3328	8	8	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0008	3326	5	0	0	0	0	5	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0009	3326	5	2	1	0	1	1	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0010	3327	4	4	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0011	3327	4	0	4	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0012	3326	4	0	1	1	2	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0013	3326	3	3	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0014	3327	2	0	2	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0015	3327	2	2	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0016	3326	2	0	0	0	0	2	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0017	3326	2	0	0	2	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0018	3326	1	0	1	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0019	3327	1	1	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0020	3327	1	0	1	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0021	3327	1	1	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0022	3326	1	0	0	1	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0023	3326	1	0	0	0	0	1	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0024	3326	1	0	1	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0025	3325	1	0	1	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0026	3326	1	0	0	1	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0027	3325	1	0	0	1	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0028	3326	1	0	0	1	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0029	3326	1	0	0	0	0	1	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0030	3326	1	0	1	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0031	3326	1	0	1	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0032	3325	1	0	0	0	0	1	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0033	3326	1	0	0	1	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0034	3326	1	0	0	0	0	1	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0035	3326	1	1	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032
P2RX7_chr12_121127876_121193032	0/0	t0036	3326	1	1	0	0	0	0	copy fasta	P2RX7	chr12	121127876	121193032