JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
P2RX7_chr12_121127876_121193032	0/0	t0037	3326	1	0	0	0	0	1	copy fasta	P2RX7	chr12	121127876	121193032
P2RY10_chrX_78940391_78968727	1/0	t0001	2498	92	33	26	13	9	10	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0002	2498	83	1	13	61	0	8	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/1	t0003	2498	59	23	15	11	2	7	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0004	2499	47	0	0	46	0	1	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0005	2497	12	8	1	0	0	3	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0006	2499	3	0	0	3	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0007	2498	2	2	0	0	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0008	2499	2	0	0	1	0	1	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0009	2498	2	0	0	2	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0010	2498	1	1	0	0	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0011	2504	1	0	0	1	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0012	2498	1	0	1	0	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0013	2499	1	0	0	1	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0014	2491	1	0	0	1	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0015	2497	1	0	0	1	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0016	2499	1	0	0	1	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0017	2500	1	0	0	1	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0018	2500	1	0	1	0	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0019	2499	1	0	0	1	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0020	2498	1	0	0	1	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0021	2502	1	0	0	1	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0022	2498	1	1	0	0	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0023	2499	1	0	0	1	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0024	2498	1	0	1	0	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0025	2498	1	0	0	1	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0026	2498	1	1	0	0	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0027	2498	1	1	0	0	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0028	2498	1	1	0	0	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY10_chrX_78940391_78968727	0/0	t0029	2494	1	0	0	1	0	0	copy fasta	P2RY10	chrX	78940391	78968727
P2RY11_chr19_10106693_10120372	1/1	t0001	664	174	52	17	82	8	13	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	t0002	664	168	16	45	76	8	23	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	t0003	664	67	4	20	34	1	8	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	t0004	664	17	7	0	7	0	3	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	t0005	664	14	14	0	0	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	t0006	664	3	3	0	0	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	t0007	664	2	0	0	0	1	1	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	t0008	664	1	0	1	0	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	t0009	664	1	1	0	0	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	t0010	664	1	0	0	1	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	t0011	664	1	0	0	1	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	t0012	664	1	0	0	1	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	t0013	664	1	0	1	0	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY11_chr19_10106693_10120372	0/0	t0014	664	1	1	0	0	0	0	copy fasta	P2RY11	chr19	10106693	10120372
P2RY12_chr3_151331843_151389753	0/0	t0001	1216	175	27	37	77	7	27	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/1	t0002	1217	74	11	12	39	3	8	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	t0003	1217	66	26	6	28	0	6	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	1/0	t0004	1216	57	6	6	35	7	2	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	t0005	1216	11	10	1	0	0	0	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	t0006	1216	2	2	0	0	0	0	copy fasta	P2RY12	chr3	151331843	151389753