JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
P2RY12_chr3_151331843_151389753	0/0	t0007	1217	2	0	1	0	1	0	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	t0008	1217	1	1	0	0	0	0	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	t0009	1216	1	0	0	0	0	1	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	t0010	1216	1	1	0	0	0	0	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	t0011	1216	1	1	0	0	0	0	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	t0012	1217	1	1	0	0	0	0	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	t0013	1217	1	1	0	0	0	0	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	t0014	1217	1	0	0	1	0	0	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	t0015	1216	1	0	1	0	0	0	copy fasta	P2RY12	chr3	151331843	151389753
P2RY12_chr3_151331843_151389753	0/0	t0016	1216	1	1	0	0	0	0	copy fasta	P2RY12	chr3	151331843	151389753
P2RY13_chr3_151321312_151334549	0/0	t0001	1701	98	20	16	54	0	8	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/1	t0002	1702	90	15	12	51	4	7	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0003	1701	75	6	22	30	2	15	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	1/0	t0004	1701	53	1	6	36	7	2	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0005	1703	41	0	3	34	0	4	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0006	1702	28	26	2	0	0	0	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0007	1700	18	1	5	4	5	3	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0008	1701	7	6	1	0	0	0	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0009	1701	6	5	1	0	0	0	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0010	1702	6	0	0	5	0	1	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0011	1701	3	3	0	0	0	0	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0012	1701	2	0	2	0	0	0	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0013	1700	1	0	1	0	0	0	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0014	1701	1	0	0	1	0	0	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0015	1702	1	1	0	0	0	0	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0016	1701	1	1	0	0	0	0	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0017	1700	1	0	0	1	0	0	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0018	1700	1	1	0	0	0	0	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0019	1700	1	1	0	0	0	0	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0020	1701	1	1	0	0	0	0	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0021	1701	1	1	0	0	0	0	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0022	1701	1	1	0	0	0	0	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0023	1701	1	0	0	0	0	1	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0024	1702	1	1	0	0	0	0	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0025	1702	1	0	1	0	0	0	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0026	1702	1	1	0	0	0	0	copy fasta	P2RY13	chr3	151321312	151334549
P2RY13_chr3_151321312_151334549	0/0	t0027	1703	1	0	0	0	0	1	copy fasta	P2RY13	chr3	151321312	151334549
P2RY14_chr3_151207117_151283542	1/1	t0001	1572	288	51	54	135	11	35	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	t0002	1571	32	0	0	29	1	2	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	t0003	1572	28	24	1	0	0	3	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	t0004	1578	13	1	5	1	4	2	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	t0005	1572	8	0	0	8	0	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	t0006	1572	8	4	0	4	0	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	t0007	1572	6	5	1	0	0	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	t0008	1572	6	0	6	0	0	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	t0009	1572	4	4	0	0	0	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	t0010	1572	3	3	0	0	0	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	t0011	1571	2	0	0	2	0	0	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	t0012	1572	1	0	0	0	0	1	copy fasta	P2RY14	chr3	151207117	151283542
P2RY14_chr3_151207117_151283542	0/0	t0013	1571	1	0	0	1	0	0	copy fasta	P2RY14	chr3	151207117	151283542