Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASCL4_chr12_107769704_107781644	0/0	t0006	1423	6	5	1	0	0	0	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	t0007	1423	5	0	0	5	0	0	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	t0008	1423	4	2	0	2	0	0	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	t0009	1423	2	0	2	0	0	0	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	t0010	1423	1	0	0	0	0	1	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	t0011	1423	1	1	0	0	0	0	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	t0012	1423	1	0	0	1	0	0	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	t0013	1423	1	0	0	1	0	0	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	t0014	1423	1	0	1	0	0	0	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	t0015	1423	1	0	0	0	0	1	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	t0016	1423	1	0	0	1	0	0	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	t0017	1423	1	0	0	0	0	1	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	t0018	1423	1	0	0	1	0	0	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	t0019	1423	1	0	0	1	0	0	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	t0020	1423	1	0	0	1	0	0	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	t0021	1423	1	1	0	0	0	0	copy fasta	ASCL4	chr12	107769704	107781644
ASCL4_chr12_107769704_107781644	0/0	t0022	1423	1	0	1	0	0	0	copy fasta	ASCL4	chr12	107769704	107781644
ASCL5_chr1_201108943_201132184	0/0	t0001	1416	193	44	39	89	4	17	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	1/1	t0002	1416	114	14	32	37	9	20	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0003	1416	31	4	1	26	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0004	1416	22	0	0	22	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0005	1416	11	10	1	0	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0006	1416	7	0	0	5	0	2	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0007	1417	4	0	1	3	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0008	1416	3	3	0	0	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0009	1416	3	3	0	0	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0010	1416	3	3	0	0	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0011	1416	3	2	1	0	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0012	1416	3	3	0	0	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0013	1416	2	2	0	0	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0014	1417	2	0	0	1	0	1	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0015	1390	2	0	0	0	1	1	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0016	1417	1	1	0	0	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0017	1416	1	1	0	0	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0018	1416	1	1	0	0	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0019	1416	1	1	0	0	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0020	1416	1	0	0	1	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0021	1417	1	1	0	0	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0022	1416	1	0	0	1	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0023	1416	1	0	1	0	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0024	1416	1	0	1	0	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0025	1417	1	0	1	0	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0026	1417	1	0	0	1	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0027	1417	1	0	0	1	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0028	1416	1	0	0	0	0	1	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0029	1416	1	1	0	0	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	t0030	1416	1	0	0	1	0	0	copy fasta	ASCL5	chr1	201108943	201132184
ASDURF_chr2_189656459_189671401	1/0	t0001	353	163	66	23	55	5	13	copy fasta	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	0/1	t0002	353	156	13	45	71	5	21	copy fasta	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	0/0	t0003	353	18	17	1	0	0	0	copy fasta	ASDURF	chr2	189656459	189671401