JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
P2RY1_chr3_152830131_152846439	0/0	t0047	5188	1	0	0	1	0	0	copy fasta	P2RY1	chr3	152830131	152846439
P2RY1_chr3_152830131_152846439	0/0	t0048	5188	1	1	0	0	0	0	copy fasta	P2RY1	chr3	152830131	152846439
P2RY1_chr3_152830131_152846439	0/0	t0049	5188	1	1	0	0	0	0	copy fasta	P2RY1	chr3	152830131	152846439
P2RY2_chr11_73213281_73247427	0/0	t0001	7486	84	1	20	54	2	7	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0002	7486	57	1	14	23	6	13	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0003	7486	34	1	2	27	2	2	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0004	7486	25	21	2	0	1	1	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/1	t0005	7486	23	0	11	3	5	3	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0006	7486	23	4	4	11	1	3	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0007	7486	9	1	0	5	0	3	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0008	7486	6	6	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0009	7486	5	0	1	4	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0010	7486	5	5	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0011	7486	5	1	1	2	0	1	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0012	7486	5	0	0	5	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0013	7486	4	0	3	1	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0014	7486	4	0	4	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0015	7486	3	0	0	3	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0016	7486	3	0	3	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0017	7486	3	0	0	3	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0018	7486	3	0	2	1	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0019	7486	3	2	1	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0020	7486	3	3	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0021	7486	3	3	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0022	7486	2	0	0	0	0	2	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0023	7486	2	0	0	2	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0024	7486	2	0	1	0	0	1	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0025	7486	2	0	0	2	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0026	7486	2	2	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0027	7486	2	0	0	2	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0028	7486	2	0	2	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0029	7486	2	0	2	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0030	7486	2	0	1	1	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0031	7486	2	0	0	2	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0032	7486	2	0	0	1	0	1	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0033	7486	2	0	0	1	0	1	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0034	7486	2	2	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0035	7486	2	2	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0036	7486	2	2	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0037	7486	1	0	0	0	0	1	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0038	7486	1	0	0	1	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0039	7486	1	0	0	1	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0040	7486	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0041	7486	1	0	0	0	0	1	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0042	7486	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0043	7486	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0044	7486	1	0	0	0	0	1	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0045	7486	1	0	1	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0046	7486	1	0	0	0	0	1	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0047	7486	1	0	0	0	0	1	copy fasta	P2RY2	chr11	73213281	73247427