JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
P2RY2_chr11_73213281_73247427	0/0	t0098	7486	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0099	7486	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0100	7486	1	0	1	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0101	7486	1	0	1	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	1/0	t0102	7486	1	0	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0103	7486	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0104	7486	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0105	7486	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0106	7486	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0107	7486	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0108	7486	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0109	7486	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0110	7486	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0111	7486	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY2_chr11_73213281_73247427	0/0	t0112	7486	1	1	0	0	0	0	copy fasta	P2RY2	chr11	73213281	73247427
P2RY4_chrX_70253166_70265204	1/1	t0001	942	323	70	56	149	13	33	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	t0002	942	2	2	0	0	0	0	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	t0003	942	1	0	0	0	0	1	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	t0004	942	1	0	1	0	0	0	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	t0005	941	1	0	0	1	0	0	copy fasta	P2RY4	chrX	70253166	70265204
P2RY4_chrX_70253166_70265204	0/0	t0006	942	1	0	0	1	0	0	copy fasta	P2RY4	chrX	70253166	70265204
P2RY6_chr11_73267338_73303625	1/1	t0001	1370	224	25	45	103	14	35	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	t0002	1370	43	26	2	11	0	4	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	t0003	1370	24	24	0	0	0	0	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	t0004	1370	14	4	7	0	2	1	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	t0005	1370	4	3	1	0	0	0	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	t0006	1370	4	4	0	0	0	0	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	t0007	1370	2	2	0	0	0	0	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	t0008	1370	2	0	2	0	0	0	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	t0009	1370	1	1	0	0	0	0	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	t0010	1370	1	1	0	0	0	0	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	t0011	1370	1	1	0	0	0	0	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	t0012	1370	1	0	0	0	1	0	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	t0013	1370	1	0	1	0	0	0	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	t0014	1370	1	0	0	0	1	0	copy fasta	P2RY6	chr11	73267338	73303625
P2RY6_chr11_73267338_73303625	0/0	t0015	1370	1	1	0	0	0	0	copy fasta	P2RY6	chr11	73267338	73303625
P2RY8_chrX_1457581_1542185	0/0	t0001	3186	58	3	19	32	0	4	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0002	3189	5	0	2	0	2	1	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0003	3187	5	5	0	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0004	3188	4	0	3	0	0	1	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	1/0	t0005	3188	4	3	0	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0006	3188	4	4	0	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0007	3186	3	0	0	3	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0008	3186	3	0	3	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0009	3186	2	2	0	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0010	3187	2	2	0	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0011	3187	1	1	0	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0012	3188	1	1	0	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0013	3186	1	0	0	1	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0014	3186	1	0	1	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185