JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
P2RY8_chrX_1457581_1542185	0/0	t0015	3189	1	0	0	0	0	1	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0016	3189	1	0	0	1	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0017	3190	1	1	0	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0018	3189	1	0	0	1	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0019	3188	1	0	0	1	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0020	3188	1	1	0	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0021	3186	1	0	1	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0022	3187	1	1	0	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0023	3186	1	0	1	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0024	3187	1	1	0	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0025	3186	1	0	0	0	1	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0026	3121	1	0	0	1	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0027	3187	1	1	0	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0028	3187	1	0	1	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0029	3190	1	1	0	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0030	3186	1	0	1	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0031	3188	1	1	0	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0032	3189	1	0	1	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0033	3189	1	1	0	0	0	0	copy fasta	P2RY8	chrX	1457581	1542185
P2RY8_chrX_1457581_1542185	0/0	t0034	3186	1	0	0	0	0	1	copy fasta	P2RY8	chrX	1457581	1542185
P3H1_chr1_42741374_42772028	0/0	t0001	381	253	51	41	120	10	31	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	1/1	t0002	381	133	38	18	60	4	11	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	t0003	381	13	6	5	0	0	2	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	t0004	381	3	3	0	0	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	t0005	381	3	0	0	3	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H1_chr1_42741374_42772028	0/0	t0006	381	1	0	0	1	0	0	copy fasta	P3H1	chr1	42741374	42772028
P3H2_chr3_189951728_190125897	0/1	t0001	1345	111	14	24	55	5	12	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0002	1345	51	13	2	35	0	1	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0003	1347	40	5	13	14	1	7	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	1/0	t0004	1351	25	0	10	7	2	5	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0005	1343	25	20	2	2	1	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0006	1347	9	3	0	6	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0007	1343	6	4	1	1	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0008	1347	4	0	2	0	1	1	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0009	1343	4	4	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0010	1349	3	2	0	0	0	1	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0011	1351	3	2	1	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0012	1353	3	0	0	1	0	2	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0013	1347	2	1	0	0	0	1	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0014	1345	2	2	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0015	1341	2	2	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0016	1341	2	2	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0017	1343	2	2	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0018	1349	1	1	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0019	1347	1	0	1	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0020	1351	1	0	0	0	0	1	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0021	1343	1	0	0	0	0	1	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0022	1341	1	1	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0023	1349	1	1	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0024	1345	1	0	0	1	0	0	copy fasta	P3H2	chr3	189951728	190125897