JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
P3H2_chr3_189951728_190125897	0/0	t0025	1339	1	1	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0026	1345	1	1	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H2_chr3_189951728_190125897	0/0	t0027	1343	1	1	0	0	0	0	copy fasta	P3H2	chr3	189951728	190125897
P3H3_chr12_6823407_6844847	0/0	t0001	421	191	49	38	80	5	19	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	t0002	421	105	2	13	77	3	10	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	1/0	t0003	421	67	23	21	2	8	12	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	t0004	421	52	2	1	43	0	6	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	t0005	421	21	8	0	12	0	1	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	t0006	421	5	5	0	0	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	t0007	421	5	1	3	0	0	1	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	t0008	421	2	0	0	2	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	t0009	421	2	2	0	0	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/0	t0010	421	1	0	0	0	0	1	copy fasta	P3H3	chr12	6823407	6844847
P3H3_chr12_6823407_6844847	0/1	t0011	421	1	0	0	0	0	0	copy fasta	P3H3	chr12	6823407	6844847
P3H4_chr17_41796953_41816949	0/1	t0001	1040	332	67	64	158	12	30	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	t0002	1041	37	13	5	14	1	4	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	1/0	t0003	1039	22	13	5	0	1	2	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	t0004	1040	3	0	1	0	1	1	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	t0005	1039	3	0	0	2	0	1	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	t0006	1040	2	2	0	0	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	t0007	1040	1	0	0	1	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	t0008	1040	1	0	1	0	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	t0009	1040	1	0	0	0	1	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	t0010	1040	1	1	0	0	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3H4_chr17_41796953_41816949	0/0	t0011	1040	1	0	0	1	0	0	copy fasta	P3H4	chr17	41796953	41816949
P3R3URF_chr1_46170486_46181488	1/1	t0001	118	421	98	84	176	18	43	copy fasta	P3R3URF	chr1	46170486	46181488
P3R3URF_chr1_46170486_46181488	0/0	t0002	106	1	0	0	0	0	1	copy fasta	P3R3URF	chr1	46170486	46181488
P4HA1_chr10_73002217_73101866	1/1	t0001	1139	95	22	13	47	1	10	copy fasta	P4HA1	chr10	73002217	73101866
P4HA1_chr10_73002217_73101866	0/0	t0002	1142	55	3	5	39	0	8	copy fasta	P4HA1	chr10	73002217	73101866
P4HA1_chr10_73002217_73101866	0/0	t0003	1139	30	15	0	15	0	0	copy fasta	P4HA1	chr10	73002217	73101866
P4HA1_chr10_73002217_73101866	0/0	t0004	1144	18	16	2	0	0	0	copy fasta	P4HA1	chr10	73002217	73101866
P4HA1_chr10_73002217_73101866	0/0	t0005	1143	17	13	4	0	0	0	copy fasta	P4HA1	chr10	73002217	73101866
P4HA1_chr10_73002217_73101866	0/0	t0006	1140	7	7	0	0	0	0	copy fasta	P4HA1	chr10	73002217	73101866
P4HA1_chr10_73002217_73101866	0/0	t0007	1140	4	3	0	1	0	0	copy fasta	P4HA1	chr10	73002217	73101866
P4HA1_chr10_73002217_73101866	0/0	t0008	1139	2	0	0	2	0	0	copy fasta	P4HA1	chr10	73002217	73101866
P4HA1_chr10_73002217_73101866	0/0	t0009	1139	1	0	0	0	1	0	copy fasta	P4HA1	chr10	73002217	73101866
P4HA1_chr10_73002217_73101866	0/0	t0010	1143	1	0	0	1	0	0	copy fasta	P4HA1	chr10	73002217	73101866
P4HA1_chr10_73002217_73101866	0/0	t0011	1139	1	1	0	0	0	0	copy fasta	P4HA1	chr10	73002217	73101866
P4HA1_chr10_73002217_73101866	0/0	t0012	1139	1	0	0	1	0	0	copy fasta	P4HA1	chr10	73002217	73101866
P4HA1_chr10_73002217_73101866	0/0	t0013	1143	1	1	0	0	0	0	copy fasta	P4HA1	chr10	73002217	73101866
P4HA1_chr10_73002217_73101866	0/0	t0014	1143	1	1	0	0	0	0	copy fasta	P4HA1	chr10	73002217	73101866
P4HA2_chr5_132185147_132232853	0/0	t0001	2947	110	23	17	57	2	11	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0002	2946	93	19	9	51	7	7	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	1/1	t0003	2946	69	1	8	47	0	11	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0004	2946	39	13	22	0	3	1	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0005	2947	24	3	2	18	0	1	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0006	2947	8	1	1	3	0	3	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0007	2946	6	0	0	6	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0008	2947	5	0	0	5	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0009	2946	5	0	3	2	0	0	copy fasta	P4HA2	chr5	132185147	132232853