JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
P4HA2_chr5_132185147_132232853	0/0	t0010	2947	4	2	2	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0011	2949	4	2	2	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0012	2946	4	4	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0013	2946	4	3	1	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0014	2945	3	0	1	0	2	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0015	2938	3	3	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0016	2946	3	0	0	3	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0017	2946	3	3	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0018	2946	2	2	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0019	2947	2	1	1	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0020	2946	2	0	2	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0021	2947	2	2	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0022	2948	2	1	0	1	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0023	2950	2	0	2	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0024	2945	2	0	0	2	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0025	2947	2	0	0	1	0	1	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0026	2946	2	2	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0027	2946	1	0	0	1	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0028	2950	1	1	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0029	2946	1	1	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0030	2947	1	0	1	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0031	2950	1	1	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0032	2947	1	1	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0033	2946	1	1	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0034	2946	1	1	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0035	2946	1	1	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0036	2946	1	0	0	1	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0037	2946	1	1	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0038	2946	1	0	0	0	0	1	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0039	2947	1	0	0	1	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0040	2947	1	1	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0041	2948	1	0	0	1	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0042	2949	1	1	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0043	2949	1	1	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0044	2949	1	1	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0045	2946	1	0	0	0	0	1	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0046	2946	1	0	0	0	0	1	copy fasta	P4HA2	chr5	132185147	132232853
P4HA2_chr5_132185147_132232853	0/0	t0047	2947	1	1	0	0	0	0	copy fasta	P4HA2	chr5	132185147	132232853
P4HA3_chr11_74261657_74316640	1/1	t0001	621	281	69	49	115	11	35	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	t0002	621	111	24	9	64	3	11	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	t0003	621	1	0	1	0	0	0	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	t0004	621	1	0	0	1	0	0	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	t0005	621	1	1	0	0	0	0	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	t0006	621	1	0	1	0	0	0	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	t0007	621	1	1	0	0	0	0	copy fasta	P4HA3	chr11	74261657	74316640
P4HA3_chr11_74261657_74316640	0/0	t0008	621	1	1	0	0	0	0	copy fasta	P4HA3	chr11	74261657	74316640
P4HB_chr17_81838166_81865535	1/1	t0001	911	221	48	43	90	9	29	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	t0002	911	50	8	7	33	0	2	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	t0003	911	48	4	23	17	3	1	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	t0004	911	32	30	1	1	0	0	copy fasta	P4HB	chr17	81838166	81865535