JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
P4HB_chr17_81838166_81865535	0/0	t0005	911	7	0	4	0	0	3	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	t0006	912	3	0	2	1	0	0	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	t0007	911	2	1	1	0	0	0	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	t0008	911	2	0	0	2	0	0	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	t0009	912	2	0	0	2	0	0	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	t0010	911	1	0	0	1	0	0	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	t0011	911	1	0	0	0	0	1	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	t0012	911	1	0	0	1	0	0	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	t0013	912	1	1	0	0	0	0	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	t0014	912	1	0	0	1	0	0	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	t0015	911	1	0	1	0	0	0	copy fasta	P4HB	chr17	81838166	81865535
P4HB_chr17_81838166_81865535	0/0	t0016	911	1	0	0	1	0	0	copy fasta	P4HB	chr17	81838166	81865535
P4HTM_chr3_48985241_49012153	1/1	t0001	263	221	84	42	62	16	15	copy fasta	P4HTM	chr3	48985241	49012153
P4HTM_chr3_48985241_49012153	0/0	t0002	263	1	0	0	0	0	1	copy fasta	P4HTM	chr3	48985241	49012153
PA2G4_chr12_56099559_56118910	1/1	t0001	1202	338	85	76	121	18	36	copy fasta	PA2G4	chr12	56099559	56118910
PA2G4_chr12_56099559_56118910	0/0	t0002	1202	8	0	0	8	0	0	copy fasta	PA2G4	chr12	56099559	56118910
PA2G4_chr12_56099559_56118910	0/0	t0003	1202	2	2	0	0	0	0	copy fasta	PA2G4	chr12	56099559	56118910
PA2G4_chr12_56099559_56118910	0/0	t0004	1202	1	0	0	1	0	0	copy fasta	PA2G4	chr12	56099559	56118910
PA2G4_chr12_56099559_56118910	0/0	t0005	1202	1	0	0	0	0	1	copy fasta	PA2G4	chr12	56099559	56118910
PA2G4_chr12_56099559_56118910	0/0	t0006	1202	1	0	0	0	0	1	copy fasta	PA2G4	chr12	56099559	56118910
PA2G4_chr12_56099559_56118910	0/0	t0007	1202	1	1	0	0	0	0	copy fasta	PA2G4	chr12	56099559	56118910
PAAF1_chr11_73871999_73936114	1/1	t0001	3776	109	4	23	59	3	18	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0002	3776	97	17	12	51	3	14	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0003	3776	40	9	8	18	1	4	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0004	3775	23	8	7	3	3	2	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0005	3776	12	12	0	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0006	3775	10	5	3	0	0	2	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0007	3776	9	9	0	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0008	3775	8	8	0	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0009	3775	7	0	0	7	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0010	3776	4	0	0	4	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0011	3775	3	3	0	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0012	3776	3	3	0	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0013	3777	3	2	1	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0014	3774	3	3	0	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0015	3776	2	2	0	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0016	3775	2	0	0	0	0	2	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0017	3775	2	0	0	2	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0018	3776	2	0	0	2	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0019	3776	2	1	1	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0020	3776	2	0	1	0	0	1	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0021	3776	2	0	0	2	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0022	3774	2	2	0	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0023	3777	1	0	0	1	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0024	3776	1	0	1	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0025	3775	1	1	0	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0026	3776	1	1	0	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0027	3776	1	0	0	0	0	1	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0028	3776	1	1	0	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0029	3776	1	0	0	1	0	0	copy fasta	PAAF1	chr11	73871999	73936114