JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAAF1_chr11_73871999_73936114	0/0	t0030	3776	1	0	0	0	0	1	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0031	3776	1	1	0	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0032	3775	1	0	0	1	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0033	3776	1	1	0	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0034	3777	1	1	0	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0035	3776	1	0	0	0	0	1	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0036	3764	1	0	0	1	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0037	3776	1	0	0	1	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0038	3775	1	0	0	1	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0039	3777	1	0	0	1	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0040	3775	1	1	0	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0041	3775	1	1	0	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0042	3775	1	0	0	1	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0043	3776	1	0	1	0	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0044	3776	1	0	0	1	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PAAF1_chr11_73871999_73936114	0/0	t0045	3791	1	0	0	1	0	0	copy fasta	PAAF1	chr11	73871999	73936114
PABIR1_chr9_68775065_68790566	0/0	t0001	4631	145	27	32	67	6	13	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0002	4639	52	3	1	45	0	3	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/1	t0003	4639	44	12	20	1	1	9	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0004	4639	38	15	8	11	3	1	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0005	4639	26	0	1	20	1	4	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0006	4639	25	0	1	23	0	1	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0007	4639	19	2	7	0	5	5	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0008	4631	15	0	0	15	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	1/0	t0009	4639	9	8	0	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0010	4639	6	0	0	6	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0011	4639	5	5	0	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0012	4639	5	5	0	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0013	4639	5	5	0	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0014	4639	4	0	0	4	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0015	4636	4	4	0	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0016	4639	4	0	0	4	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0017	4631	3	3	0	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0018	4639	3	0	0	3	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0019	4639	3	0	3	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0020	4631	2	0	0	2	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0021	4639	2	1	1	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0022	4639	2	0	0	2	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0023	4639	1	0	1	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0024	4639	1	1	0	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0025	4639	1	1	0	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0026	4639	1	1	0	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0027	4639	1	1	0	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0028	4639	1	1	0	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0029	4631	1	0	0	1	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0030	4631	1	0	0	1	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0031	4639	1	0	0	1	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0032	4639	1	0	1	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0033	4639	1	1	0	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0034	4639	1	1	0	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566