JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PABIR1_chr9_68775065_68790566	0/0	t0035	4639	1	1	0	0	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0036	4639	1	0	0	1	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR1_chr9_68775065_68790566	0/0	t0037	4639	1	0	0	1	0	0	copy fasta	PABIR1	chr9	68775065	68790566
PABIR2_chrX_134764566_134802205	1/1	t0001	3574	189	51	31	80	7	18	copy fasta	PABIR2	chrX	134764566	134802205
PABIR2_chrX_134764566_134802205	0/0	t0002	3574	5	5	0	0	0	0	copy fasta	PABIR2	chrX	134764566	134802205
PABIR2_chrX_134764566_134802205	0/0	t0003	3574	4	0	0	4	0	0	copy fasta	PABIR2	chrX	134764566	134802205
PABIR2_chrX_134764566_134802205	0/0	t0004	3574	3	0	0	3	0	0	copy fasta	PABIR2	chrX	134764566	134802205
PABIR2_chrX_134764566_134802205	0/0	t0005	3574	2	0	0	0	0	2	copy fasta	PABIR2	chrX	134764566	134802205
PABIR2_chrX_134764566_134802205	0/0	t0006	3574	2	2	0	0	0	0	copy fasta	PABIR2	chrX	134764566	134802205
PABIR2_chrX_134764566_134802205	0/0	t0007	3574	2	2	0	0	0	0	copy fasta	PABIR2	chrX	134764566	134802205
PABIR2_chrX_134764566_134802205	0/0	t0008	3573	1	0	1	0	0	0	copy fasta	PABIR2	chrX	134764566	134802205
PABIR2_chrX_134764566_134802205	0/0	t0009	3581	1	0	0	1	0	0	copy fasta	PABIR2	chrX	134764566	134802205
PABIR2_chrX_134764566_134802205	0/0	t0010	3575	1	0	0	1	0	0	copy fasta	PABIR2	chrX	134764566	134802205
PABIR2_chrX_134764566_134802205	0/0	t0011	3576	1	0	0	0	0	1	copy fasta	PABIR2	chrX	134764566	134802205
PABIR2_chrX_134764566_134802205	0/0	t0012	3575	1	0	0	1	0	0	copy fasta	PABIR2	chrX	134764566	134802205
PABIR2_chrX_134764566_134802205	0/0	t0013	3574	1	0	0	1	0	0	copy fasta	PABIR2	chrX	134764566	134802205
PABIR2_chrX_134764566_134802205	0/0	t0014	3574	1	0	0	1	0	0	copy fasta	PABIR2	chrX	134764566	134802205
PABIR2_chrX_134764566_134802205	0/0	t0015	3574	1	0	0	0	0	1	copy fasta	PABIR2	chrX	134764566	134802205
PABIR2_chrX_134764566_134802205	0/0	t0016	3574	1	0	1	0	0	0	copy fasta	PABIR2	chrX	134764566	134802205
PABIR2_chrX_134764566_134802205	0/0	t0017	3576	1	0	0	1	0	0	copy fasta	PABIR2	chrX	134764566	134802205
PABIR3_chrX_134802237_134859832	1/1	t0001	780	153	18	25	79	5	24	copy fasta	PABIR3	chrX	134802237	134859832
PABIR3_chrX_134802237_134859832	0/0	t0002	780	40	36	4	0	0	0	copy fasta	PABIR3	chrX	134802237	134859832
PABIR3_chrX_134802237_134859832	0/0	t0003	780	5	5	0	0	0	0	copy fasta	PABIR3	chrX	134802237	134859832
PABIR3_chrX_134802237_134859832	0/0	t0004	780	1	1	0	0	0	0	copy fasta	PABIR3	chrX	134802237	134859832
PABPC1L2A_chrX_73072276_73084512	0/0	t0001	1635	104	12	17	66	2	7	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/1	t0002	1639	58	5	29	1	7	15	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0003	1637	40	16	3	21	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0004	1633	17	3	1	7	0	6	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0005	1635	9	2	5	0	2	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0006	1635	8	6	0	2	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0007	1637	5	5	0	0	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0008	1633	5	3	0	2	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0009	1637	3	3	0	0	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0010	1633	2	2	0	0	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	1/0	t0011	1635	2	1	0	0	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0012	1635	2	0	0	2	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0013	1635	2	0	0	2	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0014	1637	2	0	0	2	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0015	1627	1	0	0	1	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0016	1617	1	1	0	0	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0017	1637	1	0	0	1	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0018	1637	1	1	0	0	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0019	1635	1	1	0	0	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0020	1637	1	1	0	0	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0021	1639	1	1	0	0	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0022	1635	1	0	0	1	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0023	1639	1	1	0	0	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0024	1638	1	0	0	1	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0025	1621	1	0	0	1	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0026	1639	1	1	0	0	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512