JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PABPC1L2A_chrX_73072276_73084512	0/0	t0027	1641	1	1	0	0	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0028	1639	1	0	1	0	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2A_chrX_73072276_73084512	0/0	t0029	1645	1	0	1	0	0	0	copy fasta	PABPC1L2A	chrX	73072276	73084512
PABPC1L2B_chrX_72997939_73011106	0/0	t0001	2560	190	57	11	107	2	13	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/1	t0002	2566	62	8	31	3	9	10	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	t0003	2560	12	0	3	9	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	t0004	2560	4	3	1	0	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	1/0	t0005	2566	3	2	0	0	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	t0006	2560	2	0	2	0	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	t0007	2556	2	0	0	2	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	t0008	2560	2	1	0	1	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	t0009	2564	2	0	0	0	0	2	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	t0010	2572	2	0	2	0	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	t0011	2556	1	1	0	0	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	t0012	2569	1	0	0	1	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	t0013	2560	1	0	0	1	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	t0014	2560	1	0	0	0	0	1	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	t0015	2560	1	0	0	1	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	t0016	2560	1	1	0	0	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	t0017	2559	1	1	0	0	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	t0018	2560	1	0	0	1	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	t0019	2566	1	0	1	0	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	t0020	2567	1	0	1	0	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	t0021	2566	1	1	0	0	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	t0022	2545	1	0	0	1	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L2B_chrX_72997939_73011106	0/0	t0023	2573	1	0	0	1	0	0	copy fasta	PABPC1L2B	chrX	72997939	73011106
PABPC1L_chr20_44905060_44944316	1/1	t0001	282	190	23	38	92	9	26	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	t0002	282	186	60	34	66	9	17	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	t0003	282	12	9	3	0	0	0	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	t0004	282	3	0	0	3	0	0	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	t0005	282	2	1	1	0	0	0	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	t0006	282	1	1	0	0	0	0	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	t0007	282	1	0	0	0	0	1	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1L_chr20_44905060_44944316	0/0	t0008	282	1	0	0	1	0	0	copy fasta	PABPC1L	chr20	44905060	44944316
PABPC1_chr8_100697916_100727088	1/1	t0001	950	378	66	62	196	16	36	copy fasta	PABPC1	chr8	100697916	100727088
PABPC1_chr8_100697916_100727088	0/0	t0002	951	29	25	4	0	0	0	copy fasta	PABPC1	chr8	100697916	100727088
PABPC1_chr8_100697916_100727088	0/0	t0003	957	4	4	0	0	0	0	copy fasta	PABPC1	chr8	100697916	100727088
PABPC1_chr8_100697916_100727088	0/0	t0004	950	1	1	0	0	0	0	copy fasta	PABPC1	chr8	100697916	100727088
PABPC1_chr8_100697916_100727088	0/0	t0005	950	1	0	0	1	0	0	copy fasta	PABPC1	chr8	100697916	100727088
PABPC1_chr8_100697916_100727088	0/0	t0006	950	1	0	0	1	0	0	copy fasta	PABPC1	chr8	100697916	100727088
PABPC1_chr8_100697916_100727088	0/0	t0007	950	1	0	0	1	0	0	copy fasta	PABPC1	chr8	100697916	100727088
PABPC1_chr8_100697916_100727088	0/0	t0008	950	1	0	0	1	0	0	copy fasta	PABPC1	chr8	100697916	100727088
PABPC3_chr13_25091136_25104254	1/0	t0001	1224	316	61	58	164	13	19	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/1	t0002	1224	122	23	19	49	5	25	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	t0003	1222	13	12	1	0	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	t0004	1224	2	1	1	0	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	t0005	1224	1	0	0	1	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	t0006	1224	1	0	0	1	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	t0007	1224	1	0	0	1	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC3_chr13_25091136_25104254	0/0	t0008	1224	1	1	0	0	0	0	copy fasta	PABPC3	chr13	25091136	25104254