Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASDURF_chr2_189656459_189671401	0/0	t0004	353	1	1	0	0	0	0	copy fasta	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	0/0	t0005	353	1	1	0	0	0	0	copy fasta	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	0/0	t0006	353	1	0	1	0	0	0	copy fasta	ASDURF	chr2	189656459	189671401
ASF1A_chr6_118889152_118914171	0/0	t0001	1820	159	12	21	97	6	23	copy fasta	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/1	t0002	1820	118	44	35	21	6	11	copy fasta	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	t0003	1820	54	8	4	40	0	2	copy fasta	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	1/0	t0004	1820	42	12	10	11	1	7	copy fasta	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	t0005	1819	7	7	0	0	0	0	copy fasta	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	t0006	1820	4	4	0	0	0	0	copy fasta	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	t0007	1820	2	0	0	2	0	0	copy fasta	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	t0008	1820	2	2	0	0	0	0	copy fasta	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	t0009	1820	2	0	0	2	0	0	copy fasta	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	t0010	1820	1	0	0	1	0	0	copy fasta	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	t0011	1820	1	1	0	0	0	0	copy fasta	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	t0012	1820	1	0	0	1	0	0	copy fasta	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	t0013	1820	1	0	0	0	1	0	copy fasta	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	t0014	1808	1	0	0	1	0	0	copy fasta	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	t0015	1820	1	1	0	0	0	0	copy fasta	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	t0016	1820	1	1	0	0	0	0	copy fasta	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	t0017	1820	1	0	0	1	0	0	copy fasta	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	t0018	1820	1	0	0	1	0	0	copy fasta	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	t0019	1820	1	0	0	0	0	1	copy fasta	ASF1A	chr6	118889152	118914171
ASF1B_chr19_14114512_14141589	1/1	t0001	1081	202	57	37	71	10	25	copy fasta	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	t0002	1081	67	22	20	16	2	7	copy fasta	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	t0003	1081	46	0	9	32	2	3	copy fasta	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	t0004	1081	4	3	1	0	0	0	copy fasta	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	t0005	1082	4	4	0	0	0	0	copy fasta	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	t0006	1081	3	3	0	0	0	0	copy fasta	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	t0007	1082	3	0	3	0	0	0	copy fasta	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	t0008	1081	2	2	0	0	0	0	copy fasta	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	t0009	1081	1	1	0	0	0	0	copy fasta	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	t0010	1081	1	0	0	1	0	0	copy fasta	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	t0011	1081	1	0	0	0	0	1	copy fasta	ASF1B	chr19	14114512	14141589
ASGR1_chr17_7168431_7184370	0/1	t0001	436	316	80	59	120	18	38	copy fasta	ASGR1	chr17	7168431	7184370
ASGR1_chr17_7168431_7184370	1/0	t0002	435	93	2	20	64	0	6	copy fasta	ASGR1	chr17	7168431	7184370
ASGR1_chr17_7168431_7184370	0/0	t0003	436	15	1	2	12	0	0	copy fasta	ASGR1	chr17	7168431	7184370
ASGR1_chr17_7168431_7184370	0/0	t0004	436	8	7	1	0	0	0	copy fasta	ASGR1	chr17	7168431	7184370
ASGR1_chr17_7168431_7184370	0/0	t0005	435	5	5	0	0	0	0	copy fasta	ASGR1	chr17	7168431	7184370
ASGR1_chr17_7168431_7184370	0/0	t0006	436	4	0	0	4	0	0	copy fasta	ASGR1	chr17	7168431	7184370
ASGR1_chr17_7168431_7184370	0/0	t0007	436	1	1	0	0	0	0	copy fasta	ASGR1	chr17	7168431	7184370
ASGR2_chr17_7096326_7119822	1/1	t0001	528	220	47	39	100	10	22	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	t0002	528	96	9	18	48	4	17	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	t0003	528	35	4	6	21	1	3	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	t0004	528	18	0	0	18	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	t0005	528	13	1	1	5	3	3	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	t0006	528	12	10	2	0	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	t0007	528	9	9	0	0	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	t0008	528	9	8	1	0	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	t0009	528	8	8	0	0	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	t0010	528	7	0	7	0	0	0	copy fasta	ASGR2	chr17	7096326	7119822