JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PABPC3_chr13_25091136_25104254	0/0	t0009	1224	1	0	1	0	0	0	copy fasta	PABPC3	chr13	25091136	25104254
PABPC4L_chr4_134191333_134206789	0/0	t0001	3873	194	37	29	108	3	17	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	1/1	t0002	3873	33	5	9	0	6	11	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0003	3873	19	9	6	0	1	3	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0004	3872	16	0	7	2	1	6	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0005	3873	15	0	1	14	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0006	3873	10	8	2	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0007	3872	10	3	1	0	0	6	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0008	3872	8	0	8	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0009	3872	7	0	7	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0010	3873	5	5	0	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0011	3873	4	0	2	0	2	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0012	3873	4	3	1	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0013	3873	4	3	1	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0014	3873	4	0	0	4	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0015	3873	3	3	0	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0016	3874	3	3	0	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0017	3873	2	0	2	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0018	3873	2	2	0	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0019	3873	2	2	0	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0020	3873	1	1	0	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0021	3873	1	0	0	1	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0022	3873	1	1	0	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0023	3873	1	0	0	1	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0024	3873	1	0	0	0	0	1	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0025	3872	1	1	0	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0026	3873	1	1	0	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0027	3873	1	0	0	1	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0028	3873	1	1	0	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0029	3873	1	0	0	1	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0030	3873	1	0	0	0	0	1	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0031	3873	1	1	0	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0032	3873	1	0	0	1	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0033	3873	1	0	1	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0034	3874	1	1	0	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0035	3872	1	0	0	0	0	1	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0036	3872	1	0	0	0	1	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0037	3873	1	0	0	1	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4L_chr4_134191333_134206789	0/0	t0038	3873	1	0	1	0	0	0	copy fasta	PABPC4L	chr4	134191333	134206789
PABPC4_chr1_39555816_39581790	1/0	t0001	1160	302	83	43	139	7	29	copy fasta	PABPC4	chr1	39555816	39581790
PABPC4_chr1_39555816_39581790	0/0	t0002	1166	42	1	5	28	4	4	copy fasta	PABPC4	chr1	39555816	39581790
PABPC4_chr1_39555816_39581790	0/0	t0003	1160	16	0	3	3	4	6	copy fasta	PABPC4	chr1	39555816	39581790
PABPC4_chr1_39555816_39581790	0/0	t0004	1160	11	1	6	0	3	1	copy fasta	PABPC4	chr1	39555816	39581790
PABPC4_chr1_39555816_39581790	0/0	t0005	1160	1	1	0	0	0	0	copy fasta	PABPC4	chr1	39555816	39581790
PABPC4_chr1_39555816_39581790	0/1	t0006	1160	1	0	0	0	0	0	copy fasta	PABPC4	chr1	39555816	39581790
PABPC4_chr1_39555816_39581790	0/0	t0007	1160	1	0	1	0	0	0	copy fasta	PABPC4	chr1	39555816	39581790
PABPC5_chrX_91429839_91443584	0/0	t0001	2058	187	32	29	102	4	20	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	1/0	t0002	2058	114	26	21	49	5	12	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	t0003	2059	8	7	1	0	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	t0004	2059	4	4	0	0	0	0	copy fasta	PABPC5	chrX	91429839	91443584