JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PABPC5_chrX_91429839_91443584	0/0	t0005	2057	4	4	0	0	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	t0006	2058	2	2	0	0	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	t0007	2057	2	0	0	2	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	t0008	2056	2	2	0	0	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	t0009	2054	1	0	0	1	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	t0010	2057	1	1	0	0	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	t0011	2052	1	1	0	0	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	t0012	2057	1	1	0	0	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	t0013	2058	1	1	0	0	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	t0014	2058	1	0	0	1	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	t0015	2059	1	0	0	1	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	t0016	2058	1	0	1	0	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	t0017	2058	1	0	0	1	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/1	t0018	2058	1	0	0	0	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	t0019	2058	1	0	0	1	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPC5_chrX_91429839_91443584	0/0	t0020	2059	1	1	0	0	0	0	copy fasta	PABPC5	chrX	91429839	91443584
PABPN1L_chr16_88858333_88871660	1/1	t0001	478	385	62	74	186	17	44	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	t0002	478	22	17	1	4	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	t0003	478	22	1	8	8	1	4	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	t0004	476	9	9	0	0	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	t0005	478	8	8	0	0	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	t0006	478	2	2	0	0	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	t0007	478	2	0	0	2	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	t0008	478	1	1	0	0	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1L_chr16_88858333_88871660	0/0	t0009	478	1	0	1	0	0	0	copy fasta	PABPN1L	chr16	88858333	88871660
PABPN1_chr14_23316457_23331163	0/1	t0001	888	162	53	36	53	5	14	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	t0002	890	127	1	20	89	6	11	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	t0003	889	56	23	13	14	5	1	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	1/0	t0004	891	39	8	4	13	1	12	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	t0005	890	12	9	1	2	0	0	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	t0006	889	9	6	0	3	0	0	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	t0007	888	4	0	1	3	0	0	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	t0008	891	3	0	3	0	0	0	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	t0009	889	3	0	0	2	1	0	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	t0010	890	2	0	0	2	0	0	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	t0011	888	1	0	0	1	0	0	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	t0012	889	1	0	0	1	0	0	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	t0013	890	1	0	0	1	0	0	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	t0014	891	1	0	0	0	0	1	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	t0015	890	1	0	0	1	0	0	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	t0016	888	1	0	0	0	0	1	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	t0017	890	1	0	0	0	0	1	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	t0018	887	1	0	0	1	0	0	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	t0019	887	1	0	0	1	0	0	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	t0020	889	1	0	0	0	0	1	copy fasta	PABPN1	chr14	23316457	23331163
PABPN1_chr14_23316457_23331163	0/0	t0021	891	1	0	0	1	0	0	copy fasta	PABPN1	chr14	23316457	23331163
PACC1_chr1_212358928_212419886	1/0	t0001	1417	197	42	37	92	7	18	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	t0002	1417	47	1	5	37	0	4	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/1	t0003	1417	46	7	10	14	3	11	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	t0004	1417	20	18	2	0	0	0	copy fasta	PACC1	chr1	212358928	212419886