JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PACC1_chr1_212358928_212419886	0/0	t0005	1417	18	2	11	4	1	0	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	t0006	1417	14	0	1	11	0	2	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	t0007	1417	7	0	0	7	0	0	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	t0008	1417	6	0	0	1	0	5	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	t0009	1417	5	5	0	0	0	0	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	t0010	1417	4	1	1	1	1	0	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	t0011	1417	2	0	1	1	0	0	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	t0012	1417	1	0	0	1	0	0	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	t0013	1417	1	1	0	0	0	0	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	t0014	1417	1	0	0	1	0	0	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	t0015	1417	1	1	0	0	0	0	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	t0016	1417	1	1	0	0	0	0	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	t0017	1417	1	1	0	0	0	0	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	t0018	1417	1	0	0	0	0	1	copy fasta	PACC1	chr1	212358928	212419886
PACC1_chr1_212358928_212419886	0/0	t0019	1417	1	0	0	0	0	1	copy fasta	PACC1	chr1	212358928	212419886
PACRGL_chr4_20695458_20737557	1/0	t0001	5563	106	15	12	62	3	13	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0002	5563	101	9	18	61	4	9	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0003	5573	43	8	9	23	2	1	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0004	5538	36	17	8	2	0	9	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/1	t0005	5545	28	0	6	12	3	6	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0006	5545	8	5	3	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0007	5548	6	0	0	6	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0008	5578	5	1	3	0	1	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0009	5580	5	1	2	0	0	2	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0010	5563	4	0	0	4	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0011	5545	4	3	1	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0012	5564	3	3	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0013	5573	3	0	3	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0014	5545	3	3	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0015	5564	2	0	0	2	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0016	5581	2	0	0	2	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0017	5563	2	2	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0018	5589	2	2	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0019	5544	2	2	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0020	5764	2	0	0	0	0	2	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0021	5545	2	2	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0022	5545	2	2	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0023	5545	2	2	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0024	5545	2	2	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0025	5545	2	0	0	0	2	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0026	5555	2	2	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0027	5560	2	0	2	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0028	5598	2	0	0	0	1	1	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0029	5548	2	0	0	2	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0030	5573	1	0	0	1	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0031	5563	1	0	1	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0032	5546	1	1	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0033	5563	1	1	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0034	5800	1	0	1	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0035	5577	1	0	0	1	0	0	copy fasta	PACRGL	chr4	20695458	20737557