JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PACRGL_chr4_20695458_20737557	0/0	t0036	5563	1	0	0	1	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0037	5563	1	0	1	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0038	5563	1	1	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0039	5563	1	1	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0040	5574	1	1	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0041	5578	1	1	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0042	5608	1	1	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0043	5573	1	0	1	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0044	5573	1	0	0	1	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0045	5576	1	1	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0046	5545	1	1	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0047	5545	1	1	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0048	5545	1	1	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0049	5556	1	1	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0050	5573	1	0	0	1	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0051	5545	1	1	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0052	5573	1	0	0	1	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0053	5580	1	0	0	0	0	1	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0054	5545	1	0	0	1	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0055	5563	1	0	1	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	t0056	5545	1	0	0	1	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRG_chr6_162722974_163320500	0/0	t0001	776	46	20	10	9	2	5	copy fasta	PACRG	chr6	162722974	163320500
PACRG_chr6_162722974_163320500	0/0	t0002	776	28	14	7	3	4	0	copy fasta	PACRG	chr6	162722974	163320500
PACRG_chr6_162722974_163320500	0/0	t0003	776	24	23	1	0	0	0	copy fasta	PACRG	chr6	162722974	163320500
PACRG_chr6_162722974_163320500	0/0	t0004	776	8	0	0	5	1	2	copy fasta	PACRG	chr6	162722974	163320500
PACRG_chr6_162722974_163320500	0/0	t0005	776	5	0	3	2	0	0	copy fasta	PACRG	chr6	162722974	163320500
PACRG_chr6_162722974_163320500	0/0	t0006	776	3	0	2	0	0	1	copy fasta	PACRG	chr6	162722974	163320500
PACRG_chr6_162722974_163320500	0/0	t0007	776	2	0	1	0	1	0	copy fasta	PACRG	chr6	162722974	163320500
PACRG_chr6_162722974_163320500	0/0	t0008	776	2	0	0	0	2	0	copy fasta	PACRG	chr6	162722974	163320500
PACRG_chr6_162722974_163320500	0/0	t0009	776	2	2	0	0	0	0	copy fasta	PACRG	chr6	162722974	163320500
PACRG_chr6_162722974_163320500	0/0	t0010	776	2	2	0	0	0	0	copy fasta	PACRG	chr6	162722974	163320500
PACRG_chr6_162722974_163320500	0/0	t0011	776	1	1	0	0	0	0	copy fasta	PACRG	chr6	162722974	163320500
PACRG_chr6_162722974_163320500	0/0	t0012	776	1	0	1	0	0	0	copy fasta	PACRG	chr6	162722974	163320500
PACRG_chr6_162722974_163320500	0/0	t0013	776	1	1	0	0	0	0	copy fasta	PACRG	chr6	162722974	163320500
PACRG_chr6_162722974_163320500	0/0	t0014	776	1	0	0	1	0	0	copy fasta	PACRG	chr6	162722974	163320500
PACRG_chr6_162722974_163320500	0/0	t0015	776	1	1	0	0	0	0	copy fasta	PACRG	chr6	162722974	163320500
PACRG_chr6_162722974_163320500	0/0	t0016	776	1	1	0	0	0	0	copy fasta	PACRG	chr6	162722974	163320500
PACRG_chr6_162722974_163320500	0/0	t0017	776	1	0	1	0	0	0	copy fasta	PACRG	chr6	162722974	163320500
PACRG_chr6_162722974_163320500	0/0	t0018	776	1	1	0	0	0	0	copy fasta	PACRG	chr6	162722974	163320500
PACS1_chr11_66065272_66249744	1/1	t0001	1680	213	57	32	98	7	17	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	t0002	1680	91	20	14	46	3	8	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	t0003	1680	4	4	0	0	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	t0004	1680	4	3	1	0	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	t0005	1680	2	2	0	0	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	t0006	1680	2	0	0	2	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	t0007	1680	2	0	1	0	0	1	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	t0008	1662	1	0	0	1	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	t0009	1680	1	0	0	1	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	t0010	1680	1	0	0	1	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	t0011	1680	1	0	0	1	0	0	copy fasta	PACS1	chr11	66065272	66249744