JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PACS2_chr14_105309748_105403147	1/1	t0001	3647	108	22	31	32	6	15	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0002	3648	13	12	1	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0003	3646	9	8	1	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0004	3647	5	4	1	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0005	3646	5	2	2	1	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0006	3647	5	0	0	5	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0007	3647	4	0	0	4	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0008	3645	3	3	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0009	3647	2	0	0	2	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0010	3647	2	2	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0011	3646	2	0	0	0	0	2	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0012	3647	2	2	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0013	3646	2	0	0	2	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0014	3647	2	2	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0015	3647	2	1	1	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0016	3648	2	2	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0017	3648	2	0	1	1	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0018	3647	2	1	1	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0019	3648	2	2	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0020	3645	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0021	3646	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0022	3647	1	0	0	1	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0023	3647	1	0	0	1	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0024	3646	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0025	3646	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0026	3646	1	0	0	1	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0027	3647	1	0	0	1	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0028	3646	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0029	3646	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0030	3647	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0031	3646	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0032	3646	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0033	3647	1	0	1	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0034	3647	1	0	0	1	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0035	3647	1	0	0	1	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0036	3646	1	0	0	1	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0037	3647	1	0	1	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0038	3647	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0039	3647	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0040	3647	1	0	0	1	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0041	3647	1	0	0	0	0	1	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0042	3648	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0043	3647	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0044	3645	1	0	1	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0045	3647	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0046	3645	1	0	1	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0047	3647	1	0	1	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0048	3648	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0049	3648	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0050	3645	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147