JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PACS2_chr14_105309748_105403147	0/0	t0051	3646	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0052	3647	1	0	0	1	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0053	3647	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0054	3647	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	t0055	3647	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACSIN1_chr6_34461076_34540223	0/1	t0001	2952	132	15	28	65	4	19	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0002	2952	87	43	5	29	5	5	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0003	2952	22	0	6	16	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0004	2952	13	1	10	2	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0005	2952	9	6	3	0	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0006	2952	4	4	0	0	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0007	2952	3	0	0	3	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0008	2952	3	0	0	0	0	3	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0009	2947	3	3	0	0	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0010	2947	3	3	0	0	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0011	2952	2	0	0	2	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0012	2952	2	2	0	0	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0013	2952	2	2	0	0	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0014	2952	2	1	1	0	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0015	2952	2	2	0	0	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0016	2952	2	1	1	0	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0017	2952	2	2	0	0	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0018	2952	1	0	0	0	0	1	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0019	2952	1	1	0	0	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0020	2952	1	1	0	0	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0021	2952	1	0	0	1	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0022	2952	1	1	0	0	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0023	2952	1	1	0	0	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0024	2952	1	0	0	0	0	1	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0025	2952	1	1	0	0	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0026	2952	1	0	0	0	0	1	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0027	2952	1	0	0	1	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0028	2952	1	1	0	0	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	1/0	t0029	2952	1	0	0	0	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0030	2952	1	1	0	0	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0031	2952	1	0	0	0	1	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0032	2952	1	1	0	0	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0033	2952	1	1	0	0	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	t0034	2952	1	0	0	1	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN2_chr22_42864773_43020149	0/0	t0001	1791	102	29	18	48	1	6	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	1/0	t0002	1791	86	20	16	30	4	15	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	t0003	1792	67	14	21	10	7	15	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	t0004	1792	7	7	0	0	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	t0005	1792	5	5	0	0	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	t0006	1790	4	4	0	0	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	t0007	1792	3	0	1	0	2	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/1	t0008	1791	2	0	0	0	1	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	t0009	1792	2	1	0	0	1	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	t0010	1792	2	1	1	0	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	t0011	1791	1	0	0	1	0	0	copy fasta	PACSIN2	chr22	42864773	43020149