JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PACSIN2_chr22_42864773_43020149	0/0	t0012	1791	1	1	0	0	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	t0013	1791	1	1	0	0	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	t0014	1791	1	1	0	0	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	t0015	1791	1	0	0	0	0	1	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	t0016	1791	1	0	0	1	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	t0017	1791	1	1	0	0	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	t0018	1791	1	0	0	1	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	t0019	1791	1	0	1	0	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	t0020	1792	1	1	0	0	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	t0021	1792	1	0	0	0	0	1	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	t0022	1792	1	0	0	1	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	t0023	1792	1	1	0	0	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	t0024	1791	1	1	0	0	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN3_chr11_47172522_47191434	1/1	t0001	599	361	86	77	138	10	48	copy fasta	PACSIN3	chr11	47172522	47191434
PACSIN3_chr11_47172522_47191434	0/0	t0002	599	3	0	1	2	0	0	copy fasta	PACSIN3	chr11	47172522	47191434
PADI1_chr1_17200128_17251007	1/1	t0001	1855	331	63	55	155	12	44	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0002	1855	14	5	5	0	2	2	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0003	1855	9	0	2	7	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0004	1855	7	1	4	0	1	1	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0005	1855	7	6	1	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0006	1855	6	6	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0007	1855	5	0	4	0	1	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0008	1855	3	2	1	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0009	1855	3	2	1	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0010	1855	2	2	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0011	1855	2	2	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0012	1855	2	2	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0013	1855	2	0	0	2	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0014	1855	1	0	0	1	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0015	1855	1	0	1	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0016	1855	1	0	0	1	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0017	1855	1	1	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0018	1855	1	1	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0019	1855	1	0	1	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0020	1855	1	0	0	0	0	1	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0021	1855	1	0	1	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0022	1855	1	1	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0023	1855	1	1	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0024	1855	1	1	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0025	1855	1	1	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	t0026	1855	1	1	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI2_chr1_17061761_17124451	0/0	t0001	2363	139	17	23	82	7	10	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/1	t0002	2362	132	16	33	62	4	16	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0003	2363	23	12	5	0	2	4	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0004	2363	7	4	1	2	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0005	2363	7	4	3	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0006	2361	6	2	3	0	1	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0007	2362	5	5	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0008	2364	4	4	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0009	2363	2	2	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451