JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PADI2_chr1_17061761_17124451	0/0	t0010	2362	2	1	0	0	0	1	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0011	2360	2	2	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0012	2363	2	2	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0013	2363	2	2	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0014	2362	1	0	1	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	1/0	t0015	2364	1	0	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0016	2360	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0017	2362	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0018	2363	1	0	0	1	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0019	2363	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0020	2364	1	0	0	1	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0021	2363	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0022	2363	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0023	2362	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0024	2362	1	0	1	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0025	2363	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0026	2362	1	0	0	0	0	1	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0027	2360	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0028	2362	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0029	2362	1	0	0	1	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0030	2363	1	0	0	1	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0031	2363	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0032	2364	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0033	2362	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0034	2364	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0035	2361	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI2_chr1_17061761_17124451	0/0	t0036	2360	1	1	0	0	0	0	copy fasta	PADI2	chr1	17061761	17124451
PADI3_chr1_17244098_17289233	0/0	t0001	1195	129	12	24	68	5	20	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0002	1195	93	27	18	37	2	9	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/1	t0003	1195	42	7	11	14	2	7	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0004	1195	27	9	1	15	2	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	1/0	t0005	1195	18	15	2	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0006	1195	18	2	10	0	4	2	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0007	1195	8	0	0	8	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0008	1195	4	4	0	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0009	1195	4	4	0	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0010	1195	2	2	0	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0011	1195	2	1	1	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0012	1195	2	1	1	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0013	1195	2	2	0	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0014	1195	2	2	0	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0015	1195	1	1	0	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0016	1195	1	0	0	0	0	1	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0017	1195	1	0	0	1	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0018	1195	1	0	0	1	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0019	1195	1	0	1	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0020	1195	1	0	1	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0021	1195	1	0	0	1	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0022	1195	1	1	0	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0023	1195	1	1	0	0	0	0	copy fasta	PADI3	chr1	17244098	17289233