JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PADI3_chr1_17244098_17289233	0/0	t0024	1195	1	0	0	0	0	1	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0025	1195	1	0	1	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0026	1195	1	1	0	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0027	1195	1	0	1	0	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0028	1195	1	0	0	0	1	0	copy fasta	PADI3	chr1	17244098	17289233
PADI3_chr1_17244098_17289233	0/0	t0029	1195	1	0	0	1	0	0	copy fasta	PADI3	chr1	17244098	17289233
PADI4_chr1_17303197_17369004	1/1	t0001	276	358	85	67	148	14	42	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	t0002	276	7	7	0	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	t0003	276	4	0	4	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	t0004	276	1	0	1	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	t0005	276	1	0	1	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI4_chr1_17303197_17369004	0/0	t0006	276	1	0	1	0	0	0	copy fasta	PADI4	chr1	17303197	17369004
PADI6_chr1_17367196_17406699	1/1	t0001	312	136	21	20	70	5	18	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	t0002	312	114	28	35	28	8	15	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	t0003	312	54	5	0	44	1	4	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	t0004	312	47	3	14	18	2	10	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	t0005	312	28	22	2	4	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	t0006	312	22	9	6	4	0	3	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	t0007	312	5	2	3	0	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	t0008	312	2	2	0	0	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	t0009	312	1	1	0	0	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	t0010	312	1	1	0	0	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	t0011	312	1	1	0	0	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	t0012	312	1	1	0	0	0	0	copy fasta	PADI6	chr1	17367196	17406699
PAEP_chr9_135556756_135571955	0/1	t0001	450	270	61	64	96	12	36	copy fasta	PAEP	chr9	135556756	135571955
PAEP_chr9_135556756_135571955	0/0	t0002	450	154	29	16	95	3	11	copy fasta	PAEP	chr9	135556756	135571955
PAEP_chr9_135556756_135571955	0/0	t0003	450	14	0	3	11	0	0	copy fasta	PAEP	chr9	135556756	135571955
PAEP_chr9_135556756_135571955	0/0	t0004	450	9	0	0	9	0	0	copy fasta	PAEP	chr9	135556756	135571955
PAEP_chr9_135556756_135571955	1/0	t0005	450	5	4	0	0	0	0	copy fasta	PAEP	chr9	135556756	135571955
PAEP_chr9_135556756_135571955	0/0	t0006	450	4	4	0	0	0	0	copy fasta	PAEP	chr9	135556756	135571955
PAEP_chr9_135556756_135571955	0/0	t0007	450	2	0	0	0	1	1	copy fasta	PAEP	chr9	135556756	135571955
PAEP_chr9_135556756_135571955	0/0	t0008	450	2	2	0	0	0	0	copy fasta	PAEP	chr9	135556756	135571955
PAEP_chr9_135556756_135571955	0/0	t0009	450	2	0	0	2	0	0	copy fasta	PAEP	chr9	135556756	135571955
PAEP_chr9_135556756_135571955	0/0	t0010	450	1	0	1	0	0	0	copy fasta	PAEP	chr9	135556756	135571955
PAEP_chr9_135556756_135571955	0/0	t0011	450	1	0	0	1	0	0	copy fasta	PAEP	chr9	135556756	135571955
PAF1_chr19_39380629_39396106	1/1	t0001	605	345	86	70	131	16	40	copy fasta	PAF1	chr19	39380629	39396106
PAF1_chr19_39380629_39396106	0/0	t0002	605	9	0	0	8	0	1	copy fasta	PAF1	chr19	39380629	39396106
PAF1_chr19_39380629_39396106	0/0	t0003	605	6	1	4	0	0	1	copy fasta	PAF1	chr19	39380629	39396106
PAF1_chr19_39380629_39396106	0/0	t0004	605	3	0	0	3	0	0	copy fasta	PAF1	chr19	39380629	39396106
PAF1_chr19_39380629_39396106	0/0	t0005	605	2	0	0	0	0	2	copy fasta	PAF1	chr19	39380629	39396106
PAF1_chr19_39380629_39396106	0/0	t0006	605	1	0	0	1	0	0	copy fasta	PAF1	chr19	39380629	39396106
PAF1_chr19_39380629_39396106	0/0	t0007	605	1	1	0	0	0	0	copy fasta	PAF1	chr19	39380629	39396106
PAF1_chr19_39380629_39396106	0/0	t0008	605	1	0	0	1	0	0	copy fasta	PAF1	chr19	39380629	39396106
PAFAH1B1_chr17_2588654_2690615	0/1	t0001	4357	78	20	25	17	5	10	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0002	4355	48	1	7	29	4	7	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	1/0	t0003	4357	32	3	7	19	1	1	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0004	4357	26	9	9	1	1	6	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0005	4357	19	0	6	11	0	2	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0006	4355	7	7	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0007	4357	7	7	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615