Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASGR2_chr17_7096326_7119822	0/0	t0011	528	2	2	0	0	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	t0012	528	1	0	0	0	0	1	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	t0013	528	1	1	0	0	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASGR2_chr17_7096326_7119822	0/0	t0014	528	1	1	0	0	0	0	copy fasta	ASGR2	chr17	7096326	7119822
ASH1L_chr1_155330268_155567803	0/1	t0001	3147	143	47	21	48	6	20	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0002	3149	5	4	1	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0003	3149	4	4	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0004	3147	3	3	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0005	3149	3	3	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0006	3147	2	0	1	0	0	1	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0007	3147	2	2	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0008	3149	2	0	0	2	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0009	3147	2	0	2	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0010	3147	1	0	1	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0011	3147	1	0	0	1	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0012	3122	1	0	0	0	0	1	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	1/0	t0013	3143	1	0	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0014	3147	1	1	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0015	3147	1	0	1	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0016	3147	1	0	0	0	1	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0017	3147	1	1	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0018	3143	1	0	0	1	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0019	3147	1	1	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0020	3147	1	1	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0021	3147	1	0	1	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0022	3147	1	0	0	1	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0023	3147	1	0	0	1	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0024	3147	1	0	0	0	1	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH1L_chr1_155330268_155567803	0/0	t0025	3147	1	1	0	0	0	0	copy fasta	ASH1L	chr1	155330268	155567803
ASH2L_chr8_38100529_38145080	0/1	t0001	1032	318	76	59	149	8	25	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	0/0	t0002	1032	3	3	0	0	0	0	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	1/0	t0003	1032	2	0	0	1	0	0	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	0/0	t0004	1032	2	1	0	1	0	0	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	0/0	t0005	1032	1	1	0	0	0	0	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	0/0	t0006	1032	1	0	0	0	0	1	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	0/0	t0007	1032	1	1	0	0	0	0	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	0/0	t0008	1032	1	0	0	1	0	0	copy fasta	ASH2L	chr8	38100529	38145080
ASH2L_chr8_38100529_38145080	0/0	t0009	1032	1	0	1	0	0	0	copy fasta	ASH2L	chr8	38100529	38145080
ASIC1_chr12_50052596_50088611	0/1	t0001	2300	203	51	34	93	5	19	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	1/0	t0002	2300	92	20	29	25	6	11	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	t0003	2300	8	8	0	0	0	0	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	t0004	2300	5	5	0	0	0	0	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	t0005	2300	3	0	3	0	0	0	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	t0006	2300	3	3	0	0	0	0	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	t0007	2300	2	2	0	0	0	0	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	t0008	2300	1	0	0	0	0	1	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	t0009	2300	1	0	0	1	0	0	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	t0010	2300	1	0	0	0	1	0	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	t0011	2300	1	0	0	0	0	1	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	t0012	2300	1	0	0	1	0	0	copy fasta	ASIC1	chr12	50052596	50088611