JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAFAH2_chr1_25954767_26003063	0/0	t0008	2308	5	0	0	0	0	5	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0009	2309	4	0	0	4	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0010	2309	2	0	0	2	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0011	2309	2	1	0	1	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0012	2309	2	0	2	0	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0013	2309	1	0	1	0	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0014	2308	1	0	0	1	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0015	2308	1	0	0	1	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0016	2309	1	1	0	0	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0017	2308	1	0	1	0	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0018	2308	1	1	0	0	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0019	2308	1	1	0	0	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0020	2308	1	0	1	0	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0021	2308	1	0	0	1	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0022	2309	1	0	0	0	1	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0023	2308	1	0	0	0	0	1	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0024	2308	1	0	0	1	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0025	2308	1	1	0	0	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0026	2308	1	0	0	1	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAG1_chr8_80962810_81117068	0/1	t0001	9450	39	4	13	14	2	5	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0002	9447	24	2	2	19	0	1	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0003	9450	16	7	1	2	0	6	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0004	9454	14	0	3	7	0	4	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0005	9447	12	0	1	10	0	1	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0006	9448	10	8	2	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	1/0	t0007	9446	9	2	1	1	0	4	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0008	9453	7	5	2	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0009	9448	6	6	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0010	9446	6	0	0	5	0	1	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0011	9451	5	0	1	2	0	2	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0012	9454	4	4	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0013	9451	4	4	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0014	9443	3	2	1	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0015	9447	3	1	0	0	1	1	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0016	9456	3	0	0	3	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0017	9447	3	0	0	0	1	2	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0018	9454	3	0	0	1	0	2	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0019	9450	3	2	1	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0020	9447	2	2	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0021	9448	2	0	0	2	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0022	9454	2	0	2	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0023	9446	2	0	0	2	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0024	9455	2	1	1	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0025	9458	2	2	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0026	9456	2	2	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0027	9447	2	0	0	2	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0028	9446	2	0	0	2	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0029	9456	2	0	0	2	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0030	9454	2	0	0	0	1	1	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0031	9449	2	2	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068