JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAG1_chr8_80962810_81117068	0/0	t0032	9448	2	2	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0033	9451	2	2	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0034	9451	2	2	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0035	9454	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0036	9447	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0037	9447	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0038	9447	1	0	0	0	0	1	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0039	9450	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0040	9447	1	0	0	1	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0041	9447	1	0	0	0	0	1	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0042	9447	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0043	9461	1	0	0	1	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0044	9450	1	0	1	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0045	9450	1	0	1	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0046	9448	1	0	0	1	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0047	9455	1	0	1	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0048	9449	1	0	0	1	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0049	9447	1	0	0	0	0	1	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0050	9446	1	0	0	1	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0051	9447	1	0	0	0	0	1	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0052	9445	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0053	9448	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0054	9454	1	0	0	1	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0055	9447	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0056	9448	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0057	9447	1	0	0	1	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0058	9447	1	0	0	0	0	1	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0059	9447	1	0	0	1	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0060	9456	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0061	9451	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0062	9447	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0063	9449	1	0	0	0	0	1	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0064	9462	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0065	9460	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0066	9449	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0067	9447	1	0	0	0	1	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0068	9448	1	0	0	1	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0069	9447	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0070	9448	1	0	0	1	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0071	9459	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0072	9454	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0073	9449	1	0	1	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0074	9447	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0075	9450	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0076	9448	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0077	9449	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0078	9450	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0079	9448	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0080	9456	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0081	9450	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068