JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAG1_chr8_80962810_81117068	0/0	t0082	9448	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0083	9447	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0084	9447	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0085	9448	1	0	1	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	t0086	9448	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAGE1_chrX_49682447_49700984	1/1	t0001	219	309	62	45	159	9	32	copy fasta	PAGE1	chrX	49682447	49700984
PAGE1_chrX_49682447_49700984	0/0	t0002	219	8	7	1	0	0	0	copy fasta	PAGE1	chrX	49682447	49700984
PAGE1_chrX_49682447_49700984	0/0	t0003	219	4	4	0	0	0	0	copy fasta	PAGE1	chrX	49682447	49700984
PAGE1_chrX_49682447_49700984	0/0	t0004	218	1	1	0	0	0	0	copy fasta	PAGE1	chrX	49682447	49700984
PAGE2B_chrX_55070030_55083909	1/1	t0001	205	304	69	57	139	11	26	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2B_chrX_55070030_55083909	0/0	t0002	205	19	8	0	9	0	2	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2B_chrX_55070030_55083909	0/0	t0003	94	1	1	0	0	0	0	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2B_chrX_55070030_55083909	0/0	t0004	206	1	0	0	1	0	0	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2_chrX_55084018_55097842	0/0	t0001	206	316	80	57	140	9	30	copy fasta	PAGE2	chrX	55084018	55097842
PAGE3_chrX_55253415_55269916	1/0	t0001	471	173	73	27	58	2	12	copy fasta	PAGE3	chrX	55253415	55269916
PAGE3_chrX_55253415_55269916	0/0	t0002	471	142	1	24	96	5	16	copy fasta	PAGE3	chrX	55253415	55269916
PAGE3_chrX_55253415_55269916	0/0	t0003	471	4	0	4	0	0	0	copy fasta	PAGE3	chrX	55253415	55269916
PAGE3_chrX_55253415_55269916	0/1	t0004	478	3	1	1	0	0	0	copy fasta	PAGE3	chrX	55253415	55269916
PAGE3_chrX_55253415_55269916	0/0	t0005	471	3	3	0	0	0	0	copy fasta	PAGE3	chrX	55253415	55269916
PAGE3_chrX_55253415_55269916	0/0	t0006	471	3	0	0	3	0	0	copy fasta	PAGE3	chrX	55253415	55269916
PAGE3_chrX_55253415_55269916	0/0	t0007	471	2	2	0	0	0	0	copy fasta	PAGE3	chrX	55253415	55269916
PAGE3_chrX_55253415_55269916	0/0	t0008	471	1	1	0	0	0	0	copy fasta	PAGE3	chrX	55253415	55269916
PAGE3_chrX_55253415_55269916	0/0	t0009	477	1	0	0	1	0	0	copy fasta	PAGE3	chrX	55253415	55269916
PAGE3_chrX_55253415_55269916	0/0	t0010	471	1	1	0	0	0	0	copy fasta	PAGE3	chrX	55253415	55269916
PAGE4_chrX_49824303_49839264	1/1	t0001	482	278	63	53	125	9	26	copy fasta	PAGE4	chrX	49824303	49839264
PAGE4_chrX_49824303_49839264	0/0	t0002	482	6	5	1	0	0	0	copy fasta	PAGE4	chrX	49824303	49839264
PAGE4_chrX_49824303_49839264	0/0	t0003	485	4	4	0	0	0	0	copy fasta	PAGE4	chrX	49824303	49839264
PAGE4_chrX_49824303_49839264	0/0	t0004	485	2	2	0	0	0	0	copy fasta	PAGE4	chrX	49824303	49839264
PAGE5_chrX_55215346_55229108	1/1	t0001	221	294	80	50	129	7	26	copy fasta	PAGE5	chrX	55215346	55229108
PAGE5_chrX_55215346_55229108	0/0	t0002	221	1	0	0	0	0	1	copy fasta	PAGE5	chrX	55215346	55229108
PAGE5_chrX_55215346_55229108	0/0	t0003	221	1	0	0	0	0	1	copy fasta	PAGE5	chrX	55215346	55229108
PAGE5_chrX_55215346_55229108	0/0	t0004	221	1	0	1	0	0	0	copy fasta	PAGE5	chrX	55215346	55229108
PAGE5_chrX_55215346_55229108	0/0	t0005	221	1	0	1	0	0	0	copy fasta	PAGE5	chrX	55215346	55229108
PAGE5_chrX_55215346_55229108	0/0	t0006	220	1	0	0	1	0	0	copy fasta	PAGE5	chrX	55215346	55229108
PAGR1_chr16_29811152_29827489	0/0	t0001	3110	174	19	33	97	7	18	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/1	t0002	3111	28	9	4	7	2	5	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0003	3110	21	1	1	19	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0004	3110	11	0	0	11	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0005	3109	11	0	0	11	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0006	3106	11	10	1	0	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0007	3111	10	10	0	0	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0008	3107	6	5	1	0	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0009	3110	4	0	0	0	3	1	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0010	3108	4	4	0	0	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0011	3109	4	0	1	2	1	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0012	3111	4	0	1	2	0	1	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0013	3110	3	0	1	0	2	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0014	3109	3	1	0	1	1	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0015	3110	3	0	0	3	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0016	3111	3	3	0	0	0	0	copy fasta	PAGR1	chr16	29811152	29827489