JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAGR1_chr16_29811152_29827489	0/0	t0017	3110	3	3	0	0	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0018	3110	2	0	2	0	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0019	3111	2	2	0	0	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0020	3110	2	2	0	0	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0021	3109	2	2	0	0	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0022	3110	2	0	0	0	0	2	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0023	3110	1	0	0	0	0	1	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0024	3109	1	0	0	1	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	1/0	t0025	3110	1	0	0	0	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0026	3110	1	0	0	0	0	1	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0027	3111	1	0	1	0	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0028	3110	1	0	1	0	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0029	3110	1	1	0	0	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0030	3110	1	0	1	0	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0031	3111	1	1	0	0	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0032	3110	1	0	0	1	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0033	3111	1	1	0	0	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0034	3112	1	1	0	0	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0035	3110	1	0	0	0	0	1	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0036	3110	1	0	0	1	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAGR1_chr16_29811152_29827489	0/0	t0037	3111	1	1	0	0	0	0	copy fasta	PAGR1	chr16	29811152	29827489
PAH_chr12_102831889_102922244	0/0	t0001	2401	150	31	31	67	6	15	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0002	2401	60	23	26	0	2	9	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0003	2401	47	2	11	25	3	6	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0004	2401	10	9	0	0	1	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0005	2401	5	5	0	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0006	2397	4	4	0	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0007	2401	4	4	0	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0008	2401	4	4	0	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0009	2401	4	2	2	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0010	2401	3	3	0	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0011	2402	3	1	1	1	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0012	2401	2	2	0	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0013	2401	2	2	0	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0014	2402	2	0	1	1	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0015	2401	1	0	0	1	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0016	2401	1	0	0	0	0	1	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0017	2402	1	1	0	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0018	2401	1	0	1	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0019	2401	1	0	0	1	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0020	2401	1	0	0	1	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0021	2401	1	0	0	0	0	1	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0022	2401	1	0	0	1	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0023	2401	1	1	0	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0024	2402	1	1	0	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0025	2401	1	1	0	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAH_chr12_102831889_102922244	0/0	t0026	2401	1	0	1	0	0	0	copy fasta	PAH	chr12	102831889	102922244
PAICS_chr4_56431260_56469578	1/1	t0001	5094	116	19	24	48	8	15	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	t0002	5095	51	5	15	28	2	1	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	t0003	5094	47	0	0	39	0	8	copy fasta	PAICS	chr4	56431260	56469578