JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAICS_chr4_56431260_56469578	0/0	t0054	5095	1	1	0	0	0	0	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	t0055	5094	1	0	0	1	0	0	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	t0056	5094	1	0	0	1	0	0	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	t0057	5096	1	0	0	1	0	0	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	t0058	5095	1	0	0	1	0	0	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	t0059	5095	1	0	0	1	0	0	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	t0060	5096	1	1	0	0	0	0	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	t0061	5096	1	0	0	1	0	0	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	t0062	5100	1	0	1	0	0	0	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	t0063	5100	1	1	0	0	0	0	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	t0064	5100	1	0	0	1	0	0	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	t0065	5100	1	0	0	1	0	0	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	t0066	5094	1	0	0	1	0	0	copy fasta	PAICS	chr4	56431260	56469578
PAICS_chr4_56431260_56469578	0/0	t0067	5096	1	0	0	0	0	1	copy fasta	PAICS	chr4	56431260	56469578
PAIP1_chr5_43521267_43562077	0/1	t0001	1343	151	8	33	80	6	23	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	t0002	1343	147	53	34	31	10	19	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	t0003	1343	16	0	0	15	0	1	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	t0004	1343	14	10	1	0	0	3	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	t0005	1336	7	6	1	0	0	0	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	1/0	t0006	1341	6	5	0	0	0	0	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	t0007	1343	4	4	0	0	0	0	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	t0008	1343	1	1	0	0	0	0	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	t0009	1343	1	0	0	1	0	0	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	t0010	1341	1	1	0	0	0	0	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	t0011	1343	1	0	0	1	0	0	copy fasta	PAIP1	chr5	43521267	43562077
PAIP1_chr5_43521267_43562077	0/0	t0012	1343	1	0	1	0	0	0	copy fasta	PAIP1	chr5	43521267	43562077
PAIP2B_chr2_71177738_71232103	0/0	t0001	5934	68	2	9	52	0	5	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/1	t0002	5936	68	5	22	24	6	10	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0003	5936	64	16	9	27	1	11	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0004	5936	42	3	8	25	2	4	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0005	5936	31	13	11	0	3	4	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	1/0	t0006	5929	11	1	6	0	1	2	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0007	5934	10	4	2	2	1	1	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0008	5934	9	0	2	7	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0009	5936	8	5	1	1	0	1	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0010	5936	7	7	0	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0011	5935	7	6	1	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0012	5936	6	5	1	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0013	5935	3	3	0	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0014	5936	3	3	0	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0015	5936	3	3	0	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0016	5936	3	3	0	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0017	5937	3	0	0	1	1	1	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0018	5936	2	2	0	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0019	5936	2	0	1	0	1	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0020	5937	2	0	1	1	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0021	5937	2	2	0	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0022	5929	1	0	1	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0023	5929	1	1	0	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0024	5936	1	1	0	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103