JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAIP2B_chr2_71177738_71232103	0/0	t0025	5936	1	0	0	1	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0026	5936	1	0	1	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0027	5934	1	1	0	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0028	5934	1	1	0	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0029	5936	1	0	0	1	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0030	5937	1	1	0	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0031	5935	1	0	0	1	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0032	5934	1	0	0	1	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0033	5934	1	0	0	1	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0034	5935	1	1	0	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0035	5936	1	1	0	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0036	5934	1	0	0	0	0	1	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0037	5934	1	1	0	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0038	5934	1	0	0	1	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0039	5936	1	1	0	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0040	5937	1	0	0	1	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0041	5935	1	0	0	1	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0042	5936	1	0	0	0	0	1	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0043	5935	1	1	0	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0044	5937	1	0	0	0	0	1	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2B_chr2_71177738_71232103	0/0	t0045	5936	1	1	0	0	0	0	copy fasta	PAIP2B	chr2	71177738	71232103
PAIP2_chr5_139336854_139374717	0/1	t0001	1076	336	81	61	141	16	36	copy fasta	PAIP2	chr5	139336854	139374717
PAIP2_chr5_139336854_139374717	0/0	t0002	1073	2	2	0	0	0	0	copy fasta	PAIP2	chr5	139336854	139374717
PAIP2_chr5_139336854_139374717	0/0	t0003	1076	1	0	0	1	0	0	copy fasta	PAIP2	chr5	139336854	139374717
PAIP2_chr5_139336854_139374717	0/0	t0004	1076	1	0	1	0	0	0	copy fasta	PAIP2	chr5	139336854	139374717
PAIP2_chr5_139336854_139374717	0/0	t0005	1076	1	0	0	1	0	0	copy fasta	PAIP2	chr5	139336854	139374717
PAIP2_chr5_139336854_139374717	1/0	t0006	1073	1	0	0	0	0	0	copy fasta	PAIP2	chr5	139336854	139374717
PAIP2_chr5_139336854_139374717	0/0	t0007	1076	1	0	0	1	0	0	copy fasta	PAIP2	chr5	139336854	139374717
PAIP2_chr5_139336854_139374717	0/0	t0008	1076	1	1	0	0	0	0	copy fasta	PAIP2	chr5	139336854	139374717
PAK1IP1_chr6_10689972_10714782	1/1	t0001	345	162	16	56	48	13	27	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	t0002	343	22	22	0	0	0	0	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	t0003	344	15	13	1	0	0	1	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	t0004	345	12	5	0	4	0	3	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	t0005	344	11	5	1	2	0	3	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	t0006	340	8	7	1	0	0	0	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	t0007	345	6	6	0	0	0	0	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	t0008	340	5	3	2	0	0	0	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	t0009	343	3	3	0	0	0	0	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	t0010	341	3	3	0	0	0	0	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	t0011	345	2	0	1	0	1	0	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	t0012	346	2	2	0	0	0	0	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	t0013	340	2	2	0	0	0	0	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	t0014	342	1	1	0	0	0	0	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	t0015	339	1	1	0	0	0	0	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1IP1_chr6_10689972_10714782	0/0	t0016	345	1	1	0	0	0	0	copy fasta	PAK1IP1	chr6	10689972	10714782
PAK1_chr11_77317017_77479094	1/1	t0001	1822	133	31	27	60	1	12	copy fasta	PAK1	chr11	77317017	77479094
PAK1_chr11_77317017_77479094	0/0	t0002	1822	71	16	12	34	2	7	copy fasta	PAK1	chr11	77317017	77479094
PAK1_chr11_77317017_77479094	0/0	t0003	1822	57	10	6	40	0	1	copy fasta	PAK1	chr11	77317017	77479094
PAK1_chr11_77317017_77479094	0/0	t0004	1820	17	17	0	0	0	0	copy fasta	PAK1	chr11	77317017	77479094
PAK1_chr11_77317017_77479094	0/0	t0005	1822	8	0	0	8	0	0	copy fasta	PAK1	chr11	77317017	77479094