JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAK1_chr11_77317017_77479094	0/0	t0006	1822	5	4	1	0	0	0	copy fasta	PAK1	chr11	77317017	77479094
PAK1_chr11_77317017_77479094	0/0	t0007	1822	3	3	0	0	0	0	copy fasta	PAK1	chr11	77317017	77479094
PAK1_chr11_77317017_77479094	0/0	t0008	1822	2	0	1	0	1	0	copy fasta	PAK1	chr11	77317017	77479094
PAK1_chr11_77317017_77479094	0/0	t0009	1822	2	1	1	0	0	0	copy fasta	PAK1	chr11	77317017	77479094
PAK1_chr11_77317017_77479094	0/0	t0010	1822	2	2	0	0	0	0	copy fasta	PAK1	chr11	77317017	77479094
PAK1_chr11_77317017_77479094	0/0	t0011	1822	1	0	0	1	0	0	copy fasta	PAK1	chr11	77317017	77479094
PAK1_chr11_77317017_77479094	0/0	t0012	1822	1	0	0	1	0	0	copy fasta	PAK1	chr11	77317017	77479094
PAK2_chr3_196734857_196837647	0/0	t0001	4565	32	3	5	18	1	5	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/1	t0002	4565	19	2	4	10	0	2	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0003	4565	8	0	0	5	1	2	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0004	4565	7	1	4	0	0	2	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0005	4565	6	5	1	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0006	4563	6	0	6	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0007	4563	5	1	0	3	0	1	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0008	4561	5	0	0	5	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0009	4565	4	0	0	0	0	4	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0010	4565	3	3	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0011	4563	3	3	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0012	4563	3	0	0	3	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0013	4565	3	2	0	0	0	1	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0014	4566	3	3	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0015	4565	3	0	0	0	2	1	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0016	4565	3	0	2	0	1	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0017	4563	3	3	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0018	4565	3	0	0	3	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0019	4565	2	2	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0020	4565	2	2	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0021	4563	2	1	0	0	0	1	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0022	4563	2	1	0	1	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0023	4565	2	0	2	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	1/0	t0024	4565	2	0	0	1	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0025	4565	2	0	0	0	2	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0026	4565	2	0	0	0	2	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0027	4565	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0028	4565	1	0	0	0	0	1	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0029	4565	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0030	4565	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0031	4565	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0032	4566	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0033	4563	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0034	4563	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0035	4566	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0036	4565	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0037	4565	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0038	4565	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0039	4565	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0040	4565	1	0	1	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0041	4565	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0042	4565	1	0	1	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0043	4565	1	0	1	0	0	0	copy fasta	PAK2	chr3	196734857	196837647