Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASIC1_chr12_50052596_50088611	0/0	t0013	2300	1	1	0	0	0	0	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	t0014	2300	1	0	0	1	0	0	copy fasta	ASIC1	chr12	50052596	50088611
ASIC1_chr12_50052596_50088611	0/0	t0015	2300	1	0	0	1	0	0	copy fasta	ASIC1	chr12	50052596	50088611
ASIC2_chr17_33008087_33298295	0/0	t0001	2059	50	6	13	20	2	9	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/1	t0002	2059	49	11	2	32	1	2	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0003	2059	35	3	12	10	2	8	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0004	2059	22	8	1	13	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0005	2059	13	7	4	0	0	2	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0006	2059	11	2	7	0	1	1	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	1/0	t0007	2059	11	2	5	0	2	1	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0008	2059	5	2	1	0	2	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0009	2059	4	3	1	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0010	2059	4	4	0	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0011	2059	3	3	0	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0012	2059	3	3	0	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0013	2059	2	2	0	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0014	2059	2	0	2	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0015	2059	2	1	1	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0016	2059	2	2	0	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0017	2042	2	2	0	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0018	2059	2	0	0	2	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0019	2059	2	2	0	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0020	2059	1	1	0	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0021	2059	1	1	0	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0022	2059	1	1	0	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0023	2059	1	0	0	0	0	1	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0024	2059	1	1	0	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0025	2059	1	1	0	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0026	2059	1	0	0	1	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0027	2059	1	1	0	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0028	2059	1	1	0	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0029	2059	1	1	0	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0030	2059	1	0	1	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0031	2059	1	0	0	0	0	1	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0032	2059	1	1	0	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0033	2059	1	0	0	0	0	1	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0034	2059	1	1	0	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC2_chr17_33008087_33298295	0/0	t0035	2059	1	1	0	0	0	0	copy fasta	ASIC2	chr17	33008087	33298295
ASIC3_chr7_151043531_151057754	1/1	t0001	458	403	87	69	187	17	41	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	t0002	458	8	0	0	8	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	t0003	458	2	0	1	0	1	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	t0004	472	1	1	0	0	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	t0005	458	1	0	0	0	0	1	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	t0006	458	1	0	0	0	0	1	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	t0007	458	1	0	0	0	0	1	copy fasta	ASIC3	chr7	151043531	151057754
ASIC3_chr7_151043531_151057754	0/0	t0008	458	1	0	0	1	0	0	copy fasta	ASIC3	chr7	151043531	151057754
ASIC4_chr2_219509482_219543772	1/1	t0001	970	364	92	78	138	14	40	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	t0002	970	3	3	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	t0003	969	1	0	1	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	t0004	970	1	0	0	0	0	1	copy fasta	ASIC4	chr2	219509482	219543772