JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAK2_chr3_196734857_196837647	0/0	t0044	4565	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0045	4565	1	0	0	0	0	1	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0046	4565	1	0	0	1	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0047	4565	1	0	0	1	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0048	4565	1	0	0	0	0	1	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0049	4565	1	0	0	1	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0050	4565	1	0	1	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0051	4565	1	0	1	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0052	4565	1	0	0	0	0	1	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0053	4566	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0054	4566	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0055	4566	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0056	4565	1	0	0	0	0	1	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0057	4565	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0058	4565	1	0	1	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0059	4565	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0060	4565	1	0	0	0	0	1	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0061	4563	1	0	1	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0062	4561	1	0	1	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0063	4565	1	1	0	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0064	4563	1	0	0	0	0	1	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0065	4565	1	0	1	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0066	4565	1	0	0	0	1	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0067	4565	1	0	1	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0068	4565	1	0	1	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK2_chr3_196734857_196837647	0/0	t0069	4565	1	0	1	0	0	0	copy fasta	PAK2	chr3	196734857	196837647
PAK3_chrX_111091191_111232361	0/1	t0001	7491	73	5	14	35	6	12	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0002	7492	19	0	1	15	0	3	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0003	7492	10	9	1	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0004	7487	9	9	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0005	7491	8	8	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0006	7487	6	5	1	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0007	7492	6	0	0	6	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0008	7492	6	6	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0009	7493	4	4	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0010	7492	4	3	1	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0011	7491	4	4	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0012	7490	4	0	0	4	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0013	7488	3	3	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0014	7487	3	1	2	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0015	7491	3	0	0	3	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0016	7491	2	0	0	2	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0017	7484	2	2	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0018	7490	2	0	1	1	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0019	7491	1	1	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0020	7485	1	1	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0021	7491	1	1	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0022	7492	1	1	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0023	7493	1	1	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0024	7488	1	1	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361