JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAK3_chrX_111091191_111232361	0/0	t0025	7489	1	1	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0026	7492	1	1	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0027	7493	1	1	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0028	7486	1	1	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0029	7491	1	0	0	0	0	1	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	1/0	t0030	7492	1	0	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0031	7484	1	1	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0032	7492	1	1	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0033	7492	1	0	0	0	1	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0034	7492	1	0	0	1	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0035	7491	1	0	0	0	0	1	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0036	7491	1	1	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0037	7491	1	0	0	1	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0038	7500	1	0	0	1	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0039	7485	1	1	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0040	7485	1	1	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0041	7490	1	0	0	0	0	1	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0042	7490	1	1	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0043	7489	1	0	0	1	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0044	7494	1	0	0	1	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK3_chrX_111091191_111232361	0/0	t0045	7492	1	1	0	0	0	0	copy fasta	PAK3	chrX	111091191	111232361
PAK4_chr19_39120786_39184404	1/1	t0001	1055	188	39	44	74	9	20	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0002	1057	61	0	8	40	3	10	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0003	1057	48	6	12	22	1	7	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0004	1055	23	0	9	11	1	2	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0005	1057	13	9	4	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0006	1055	6	6	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0007	1057	5	5	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0008	1055	3	0	0	0	0	3	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0009	1057	3	3	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0010	1057	2	2	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0011	1057	2	2	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0012	1057	2	2	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0013	1057	2	2	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0014	1054	2	2	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0015	1057	1	0	1	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0016	1057	1	1	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0017	1054	1	1	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0018	1057	1	1	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0019	1057	1	0	0	0	0	1	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0020	1057	1	0	0	0	0	1	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0021	1055	1	0	0	1	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK4_chr19_39120786_39184404	0/0	t0022	1055	1	1	0	0	0	0	copy fasta	PAK4	chr19	39120786	39184404
PAK5_chr20_9532370_9844076	0/0	t0001	2569	43	9	12	11	4	7	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0002	2569	30	15	7	0	1	7	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0003	2570	26	14	1	10	1	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0004	2571	21	1	2	16	0	2	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	1/1	t0005	2569	21	7	6	3	2	1	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0006	2570	13	8	3	2	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0007	2569	10	6	3	0	0	1	copy fasta	PAK5	chr20	9532370	9844076