JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAK5_chr20_9532370_9844076	0/0	t0008	2570	6	0	1	0	1	4	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0009	2569	6	0	0	6	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0010	2570	6	6	0	0	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0011	2569	5	0	0	5	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0012	2569	4	0	0	4	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0013	2570	2	0	0	2	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0014	2569	2	0	1	0	1	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0015	2571	2	0	0	2	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0016	2569	2	0	2	0	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0017	2571	1	1	0	0	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0018	2571	1	0	0	1	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0019	2570	1	0	0	1	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0020	2570	1	0	0	1	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0021	2571	1	1	0	0	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0022	2570	1	1	0	0	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0023	2570	1	0	0	1	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0024	2569	1	0	0	1	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK5_chr20_9532370_9844076	0/0	t0025	2569	1	1	0	0	0	0	copy fasta	PAK5	chr20	9532370	9844076
PAK6_chr15_40234063_40282487	0/0	t0001	2324	91	13	8	60	3	7	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0002	2346	26	2	3	17	0	4	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0003	2326	26	4	3	17	0	2	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0004	2342	18	3	6	7	1	1	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0005	2344	18	1	5	7	1	4	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0006	2342	17	0	0	13	0	4	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0007	2330	16	3	2	11	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0008	2348	12	0	6	5	1	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0009	2336	12	10	1	0	1	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0010	2344	10	9	1	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0011	2324	10	5	0	5	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0012	2350	9	0	1	4	0	4	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0013	2344	9	0	6	2	1	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/1	t0014	2346	8	2	1	0	2	2	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0015	2342	7	7	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0016	2328	6	3	1	2	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0017	2326	6	1	0	5	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0018	2340	5	1	1	3	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0019	2344	5	0	1	4	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0020	2324	5	1	2	1	0	1	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0021	2328	5	1	0	4	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0022	2332	4	1	0	3	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0023	2340	4	2	0	1	1	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0024	2342	4	2	1	0	1	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0025	2346	4	1	0	3	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0026	2344	4	0	3	0	1	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0027	2346	4	2	0	2	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0028	2338	3	0	0	0	1	2	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0029	2340	3	2	1	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0030	2346	3	1	1	1	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0031	2340	3	0	2	0	0	1	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0032	2344	3	0	2	0	0	1	copy fasta	PAK6	chr15	40234063	40282487