JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAK6_chr15_40234063_40282487	0/0	t0033	2346	3	0	2	1	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0034	2352	2	0	1	0	0	1	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0035	2328	2	2	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0036	2332	2	0	0	2	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0037	2338	2	2	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0038	2348	2	2	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0039	2348	2	0	1	1	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0040	2348	2	2	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0041	2342	2	2	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0042	2340	2	1	0	0	0	1	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0043	2348	2	0	0	0	0	2	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0044	2348	2	0	0	1	1	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0045	2344	2	0	0	1	0	1	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0046	2348	2	0	2	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0047	2338	2	1	1	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0048	2346	1	0	0	1	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0049	2330	1	0	1	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0050	2346	1	0	0	0	0	1	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0051	2350	1	0	0	0	1	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0052	2334	1	0	0	0	0	1	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0053	2336	1	0	0	1	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0054	2354	1	0	0	1	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0055	2348	1	0	1	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0056	2322	1	0	0	1	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0057	2324	1	0	0	1	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0058	2324	1	1	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0059	2346	1	1	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0060	2350	1	1	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0061	2350	1	0	0	1	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0062	2346	1	1	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0063	2336	1	0	1	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0064	2336	1	0	0	0	1	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0065	2340	1	0	0	0	1	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0066	2342	1	0	0	0	0	1	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0067	2348	1	0	0	0	0	1	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0068	2326	1	0	0	1	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0069	2342	1	0	0	1	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0070	2346	1	0	1	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0071	2340	1	0	0	0	0	1	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0072	2346	1	0	0	0	0	1	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0073	2330	1	0	0	1	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	1/0	t0074	2334	1	0	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0075	2336	1	0	1	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0076	2346	1	1	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0077	2352	1	1	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0078	2342	1	1	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0079	2344	1	0	0	0	0	1	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0080	2336	1	0	0	0	0	1	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0081	2346	1	1	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487
PAK6_chr15_40234063_40282487	0/0	t0082	2324	1	1	0	0	0	0	copy fasta	PAK6	chr15	40234063	40282487