JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PALB2_chr16_23598165_23646310	1/1	t0001	448	300	64	52	138	14	30	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	t0002	448	25	10	10	1	0	4	copy fasta	PALB2	chr16	23598165	23646310
PALB2_chr16_23598165_23646310	0/0	t0003	448	1	0	0	1	0	0	copy fasta	PALB2	chr16	23598165	23646310
PALD1_chr10_70473767_70573450	0/0	t0001	2039	56	8	23	16	3	6	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0002	2042	44	4	5	24	3	8	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0003	2043	37	2	11	14	4	6	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0004	2043	27	1	8	16	0	2	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0005	2042	19	4	3	4	1	7	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0006	2043	9	8	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0007	2040	8	7	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0008	2041	8	6	2	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0009	2041	8	7	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	1/0	t0010	2040	7	5	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0011	2039	7	1	3	1	0	2	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0012	2043	5	0	1	1	0	3	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0013	2042	5	1	2	1	0	1	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0014	2042	4	4	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0015	2041	4	4	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/1	t0016	2043	4	0	1	0	0	2	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0017	2042	4	1	0	1	0	2	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0018	2042	3	3	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0019	2043	3	0	0	0	0	3	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0020	2044	3	0	0	3	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0021	2041	3	0	0	3	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0022	2043	3	0	0	3	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0023	2042	2	2	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0024	2041	2	0	0	2	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0025	2042	2	0	1	0	0	1	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0026	2043	2	1	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0027	2043	2	2	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0028	2040	2	2	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0029	2043	2	0	1	0	0	1	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0030	2040	2	2	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0031	2044	1	1	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0032	2042	1	0	0	1	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0033	2043	1	1	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0034	2042	1	1	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0035	2041	1	1	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0036	2043	1	0	0	1	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0037	2041	1	0	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0038	2044	1	1	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0039	2040	1	1	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0040	2039	1	0	0	1	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0041	2042	1	1	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0042	2042	1	1	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0043	2042	1	1	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0044	2043	1	0	0	0	1	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0045	2041	1	1	0	0	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0046	2041	1	0	0	1	0	0	copy fasta	PALD1	chr10	70473767	70573450
PALD1_chr10_70473767_70573450	0/0	t0047	2042	1	0	1	0	0	0	copy fasta	PALD1	chr10	70473767	70573450