JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PALM2AKAP2_chr9_109775198_110177512	0/0	t0025	4307	1	0	0	1	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	t0026	4307	1	1	0	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	t0027	4307	1	1	0	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	t0028	4307	1	1	0	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	t0029	4307	1	0	0	0	1	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	t0030	4307	1	0	0	1	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	t0031	4307	1	1	0	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	t0032	4307	1	1	0	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	t0033	4307	1	1	0	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	t0034	4307	1	1	0	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	t0035	4307	1	0	0	1	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM2AKAP2_chr9_109775198_110177512	0/0	t0036	4307	1	0	1	0	0	0	copy fasta	PALM2AKAP2	chr9	109775198	110177512
PALM3_chr19_14048367_14067076	1/1	t0001	335	340	39	65	180	16	38	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	t0002	335	97	57	16	12	2	10	copy fasta	PALM3	chr19	14048367	14067076
PALM3_chr19_14048367_14067076	0/0	t0003	335	1	0	1	0	0	0	copy fasta	PALM3	chr19	14048367	14067076
PALMD_chr1_99641113_99699535	1/1	t0001	679	358	77	70	158	12	39	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	t0002	676	13	13	0	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	t0003	679	3	0	0	3	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	t0004	679	2	2	0	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	t0005	679	1	1	0	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	t0006	679	1	1	0	0	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	t0007	679	1	0	0	1	0	0	copy fasta	PALMD	chr1	99641113	99699535
PALMD_chr1_99641113_99699535	0/0	t0008	679	1	0	0	0	0	1	copy fasta	PALMD	chr1	99641113	99699535
PALM_chr19_703935_753329	1/1	t0001	1728	124	26	34	39	5	18	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0002	1728	111	36	30	23	8	14	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0003	1728	60	0	2	55	0	3	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0004	1728	38	2	2	27	0	7	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0005	1728	16	0	0	13	0	3	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0006	1728	12	10	1	0	1	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0007	1728	6	6	0	0	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0008	1728	4	3	1	0	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0009	1728	4	1	2	0	1	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0010	1728	3	2	1	0	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0011	1728	2	0	0	2	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0012	1728	2	0	0	2	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0013	1728	2	0	2	0	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0014	1728	2	1	1	0	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0015	1728	1	1	0	0	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0016	1728	1	1	0	0	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0017	1729	1	0	1	0	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0018	1729	1	0	0	1	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0019	1729	1	0	0	1	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0020	1729	1	0	0	1	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0021	1728	1	0	0	0	0	1	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0022	1728	1	0	1	0	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0023	1728	1	0	0	0	1	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0024	1728	1	0	0	1	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0025	1728	1	0	0	1	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0026	1728	1	1	0	0	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0027	1728	1	0	1	0	0	0	copy fasta	PALM	chr19	703935	753329