JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PALM_chr19_703935_753329	0/0	t0028	1728	1	0	0	1	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0029	1728	1	0	1	0	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0030	1728	1	1	0	0	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0031	1728	1	0	0	1	0	0	copy fasta	PALM	chr19	703935	753329
PALM_chr19_703935_753329	0/0	t0032	1728	1	1	0	0	0	0	copy fasta	PALM	chr19	703935	753329
PALS1_chr14_67236435_67341061	0/0	t0001	3443	105	26	15	58	1	5	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	1/1	t0002	3441	91	18	20	44	2	5	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0003	3443	25	15	8	2	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0004	3441	20	2	6	9	0	3	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0005	3443	11	1	0	9	0	1	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0006	3443	4	4	0	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0007	3440	4	2	1	1	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0008	3441	4	4	0	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0009	3445	3	0	0	3	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0010	3418	3	3	0	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0011	3441	2	0	2	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0012	3441	2	0	2	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0013	3417	2	0	2	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0014	3441	1	1	0	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0015	3441	1	0	1	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0016	3443	1	0	1	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0017	3443	1	1	0	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0018	3443	1	1	0	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0019	3443	1	1	0	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0020	3445	1	1	0	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0021	3441	1	0	0	0	1	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0022	3443	1	0	0	0	0	1	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0023	3441	1	0	1	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0024	3411	1	0	0	0	0	1	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0025	3440	1	1	0	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0026	3418	1	1	0	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS1_chr14_67236435_67341061	0/0	t0027	3442	1	0	1	0	0	0	copy fasta	PALS1	chr14	67236435	67341061
PALS2_chr7_24568452_24699193	0/0	t0001	6728	26	2	6	13	1	4	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0002	6728	24	6	2	16	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0003	6730	24	2	0	22	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	1/0	t0004	6724	13	2	6	2	2	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0005	6730	11	0	2	7	1	1	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0006	6728	10	0	2	8	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0007	6728	9	0	2	4	2	1	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0008	6728	9	0	3	4	0	2	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0009	6730	9	1	1	5	1	1	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0010	6732	9	1	1	5	0	2	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0011	6716	9	1	4	3	0	1	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0012	6722	7	0	4	0	0	3	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0013	6732	7	2	1	4	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0014	6732	6	1	1	4	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0015	6728	6	0	1	4	0	1	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0016	6732	6	1	2	3	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0017	6704	5	0	0	5	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/1	t0018	6720	5	2	1	0	0	1	copy fasta	PALS2	chr7	24568452	24699193