JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
PALS2_chr7_24568452_24699193	0/0	t0069	6734	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0070	6734	1	0	0	0	1	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0071	6736	1	0	1	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0072	6738	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0073	6748	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0074	6734	1	0	1	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0075	6738	1	0	1	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0076	6724	1	0	0	0	1	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0077	6735	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0078	6737	1	1	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0079	6730	1	0	0	0	1	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0080	6726	1	0	0	0	1	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0081	6724	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0082	6726	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0083	6728	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0084	6732	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0085	6726	1	1	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0086	6726	1	1	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0087	6730	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0088	6730	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0089	6728	1	0	1	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0090	6722	1	1	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0091	6736	1	0	1	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0092	6722	1	1	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0093	6724	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0094	6724	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0095	6726	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0096	6738	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0097	6716	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0098	6716	1	0	1	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0099	6716	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0100	6726	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0101	6734	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0102	6736	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0103	6736	1	1	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0104	6730	1	1	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0105	6726	1	1	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0106	6730	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0107	6730	1	1	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0108	6730	1	1	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0109	6736	1	1	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0110	6724	1	0	0	0	1	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0111	6724	1	1	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0112	6724	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0113	6730	1	1	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0114	6730	1	1	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0115	6730	1	1	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0116	6722	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0117	6726	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0118	6728	1	0	0	1	0	copy fasta	PALS2	chr7	24568452	24699193