Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASIC4_chr2_219509482_219543772	0/0	t0005	970	1	0	0	0	0	1	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	t0006	970	1	1	0	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC4_chr2_219509482_219543772	0/0	t0007	970	1	0	1	0	0	0	copy fasta	ASIC4	chr2	219509482	219543772
ASIC5_chr4_155824729_155871277	1/1	t0001	179	259	76	52	88	13	28	copy fasta	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	t0002	179	37	2	11	22	0	2	copy fasta	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	t0003	179	28	11	2	10	1	4	copy fasta	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	t0004	179	6	0	2	0	0	4	copy fasta	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	t0005	179	2	2	0	0	0	0	copy fasta	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	t0006	179	1	0	1	0	0	0	copy fasta	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	t0007	179	1	1	0	0	0	0	copy fasta	ASIC5	chr4	155824729	155871277
ASIP_chr20_34236423_34274344	1/1	t0001	255	190	22	34	103	8	21	copy fasta	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	t0002	255	115	52	12	38	2	11	copy fasta	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	t0003	255	1	0	0	1	0	0	copy fasta	ASIP	chr20	34236423	34274344
ASL_chr7_66070819_66098576	1/1	t0001	746	132	34	17	58	9	12	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	t0002	746	131	51	25	38	7	10	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	t0003	746	44	2	12	25	0	5	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	t0004	746	2	2	0	0	0	0	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	t0005	746	1	0	0	1	0	0	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	t0006	746	1	0	0	1	0	0	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	t0007	746	1	0	0	0	0	1	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	t0008	746	1	0	0	0	0	1	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	t0009	746	1	0	0	0	0	1	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	t0010	746	1	0	0	1	0	0	copy fasta	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	t0011	746	1	1	0	0	0	0	copy fasta	ASL	chr7	66070819	66098576
ASMTL_chrX_1398139_1457909	1/1	t0001	200	182	51	42	71	6	10	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	t0002	201	1	0	0	1	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	t0003	200	1	1	0	0	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMTL_chrX_1398139_1457909	0/0	t0004	199	1	0	0	1	0	0	copy fasta	ASMTL	chrX	1398139	1457909
ASMT_chrX_1610059_1648081	0/0	t0001	209	156	48	29	64	5	10	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	1/1	t0002	209	64	11	16	23	3	9	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	t0003	209	1	1	0	0	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	t0004	209	1	0	0	0	0	1	copy fasta	ASMT	chrX	1610059	1648081
ASMT_chrX_1610059_1648081	0/0	t0005	209	1	0	1	0	0	0	copy fasta	ASMT	chrX	1610059	1648081
ASNSD1_chr2_189656459_189675831	0/0	t0001	480	158	60	23	57	5	13	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/1	t0002	480	154	13	41	71	5	23	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	t0003	480	19	18	1	0	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	1/0	t0004	480	5	4	0	0	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	t0005	480	2	2	0	0	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	t0006	480	1	1	0	0	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	t0007	480	1	0	1	0	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNS_chr7_97846677_97877408	1/0	t0001	700	295	59	53	141	14	27	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	t0002	700	65	5	11	34	4	11	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/1	t0003	700	26	10	6	9	0	0	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	t0004	700	24	0	1	23	0	0	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	t0005	700	14	14	0	0	0	0	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	t0006	700	8	6	1	1	0	0	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	t0007	700	1	1	0	0	0	0	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	t0008	700	1	0	0	1	0	0	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	t0009	700	1	0	0	1	0	0	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	t0010	700	1	1	0	0	0	0	copy fasta	ASNS	chr7	97846677	97877408