JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PALS2_chr7_24568452_24699193	0/0	t0119	6716	1	1	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0120	6734	1	1	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0121	6726	1	1	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0122	6731	1	1	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0123	6729	1	0	0	1	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0124	6727	1	0	1	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0125	6733	1	1	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0126	6732	1	1	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0127	6734	1	1	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0128	6736	1	1	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0129	6734	1	1	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0130	6728	1	1	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0131	6722	1	1	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0132	6729	1	1	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0133	6732	1	0	0	1	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0134	6726	1	1	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0135	6727	1	1	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PALS2_chr7_24568452_24699193	0/0	t0136	6732	1	1	0	0	0	0	copy fasta	PALS2	chr7	24568452	24699193
PAM16_chr16_4335251_4356321	0/1	t0001	156	362	96	72	134	16	43	copy fasta	PAM16	chr16	4335251	4356321
PAM16_chr16_4335251_4356321	0/0	t0002	156	3	0	0	0	0	3	copy fasta	PAM16	chr16	4335251	4356321
PAM16_chr16_4335251_4356321	0/0	t0003	156	2	2	0	0	0	0	copy fasta	PAM16	chr16	4335251	4356321
PAMR1_chr11_35426827_35530616	0/1	t0001	561	203	33	34	109	6	20	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	1/0	t0002	561	113	20	28	51	5	8	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	t0003	561	58	33	6	8	1	10	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	t0004	561	1	0	0	1	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	t0005	561	1	1	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	t0006	561	1	1	0	0	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAMR1_chr11_35426827_35530616	0/0	t0007	561	1	0	0	1	0	0	copy fasta	PAMR1	chr11	35426827	35530616
PAM_chr5_102750305_103034716	0/0	t0001	1069	70	30	14	18	1	7	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	t0002	1069	52	26	5	20	0	1	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	t0003	1069	35	11	9	8	0	7	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	1/1	t0004	1069	26	0	6	16	1	1	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	t0005	1069	1	0	0	0	0	1	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	t0006	1069	1	0	0	0	0	1	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	t0007	1069	1	0	0	1	0	0	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	t0008	1069	1	0	0	1	0	0	copy fasta	PAM	chr5	102750305	103034716
PAM_chr5_102750305_103034716	0/0	t0009	1069	1	1	0	0	0	0	copy fasta	PAM	chr5	102750305	103034716
PAN2_chr12_56311936_56339000	1/1	t0001	927	244	77	36	94	14	21	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	t0002	927	66	1	10	43	0	12	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	t0003	927	18	0	4	12	2	0	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	t0004	927	3	0	0	3	0	0	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	t0005	927	2	0	2	0	0	0	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	t0006	927	1	0	0	1	0	0	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	t0007	927	1	0	0	0	0	1	copy fasta	PAN2	chr12	56311936	56339000
PAN2_chr12_56311936_56339000	0/0	t0008	927	1	0	0	1	0	0	copy fasta	PAN2	chr12	56311936	56339000
PAN3_chr13_28133545_28300335	0/0	t0001	2923	73	14	7	40	0	12	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0002	2943	33	3	1	28	0	1	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0003	2944	21	7	4	10	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/1	t0004	2924	20	2	5	9	0	3	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0005	2937	12	4	2	3	1	2	copy fasta	PAN3	chr13	28133545	28300335