JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAN3_chr13_28133545_28300335	0/0	t0006	2927	9	2	5	0	0	2	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0007	2938	7	1	2	2	0	2	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0008	2942	6	5	1	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0009	2942	6	2	0	4	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0010	2934	5	5	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0011	2936	3	3	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0012	2937	3	3	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0013	2923	3	2	0	0	1	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0014	2927	3	3	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0015	2938	2	2	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0016	2934	2	0	0	1	0	1	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0017	2936	2	2	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0018	2936	2	1	1	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0019	2937	2	2	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0020	2933	2	0	0	2	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0021	2948	1	1	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0022	2945	1	0	1	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0023	2937	1	1	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0024	2938	1	1	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0025	2938	1	0	1	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0026	2932	1	0	1	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0027	2935	1	0	1	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0028	2935	1	1	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0029	2936	1	1	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0030	2936	1	1	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0031	2945	1	1	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0032	2937	1	1	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0033	2948	1	1	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0034	2942	1	0	0	1	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0035	2943	1	0	0	1	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0036	2935	1	0	0	1	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0037	2945	1	0	0	1	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0038	2957	1	1	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0039	2935	1	1	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0040	2936	1	1	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0041	2937	1	1	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0042	2937	1	1	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0043	2927	1	0	0	0	0	1	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0044	2924	1	0	0	1	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0045	2927	1	0	1	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0046	2923	1	0	0	0	0	1	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0047	2949	1	1	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0048	2923	1	1	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0049	2932	1	0	0	1	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0050	2923	1	0	0	1	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0051	2924	1	0	0	1	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0052	2936	1	1	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0053	2924	1	0	0	1	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	1/0	t0054	2927	1	0	0	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PAN3_chr13_28133545_28300335	0/0	t0055	2923	1	0	0	0	0	1	copy fasta	PAN3	chr13	28133545	28300335