JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAN3_chr13_28133545_28300335	0/0	t0056	2924	1	0	1	0	0	0	copy fasta	PAN3	chr13	28133545	28300335
PANK1_chr10_89577988_89650242	1/1	t0001	1770	112	30	35	29	10	6	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0002	1770	86	39	11	20	1	15	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0003	1770	68	5	14	40	1	8	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0004	1770	25	0	2	20	0	3	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0005	1770	21	0	5	16	0	0	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0006	1770	14	0	0	3	0	11	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0007	1770	9	1	2	3	2	1	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0008	1770	6	6	0	0	0	0	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0009	1770	6	5	1	0	0	0	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0010	1770	3	3	0	0	0	0	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0011	1770	3	0	0	3	0	0	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0012	1770	2	2	0	0	0	0	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0013	1770	2	0	0	0	0	2	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0014	1770	1	0	0	0	0	1	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0015	1770	1	0	0	0	0	1	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0016	1770	1	0	1	0	0	0	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0017	1770	1	0	0	1	0	0	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0018	1770	1	0	0	1	0	0	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0019	1770	1	1	0	0	0	0	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0020	1770	1	0	1	0	0	0	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0021	1770	1	0	1	0	0	0	copy fasta	PANK1	chr10	89577988	89650242
PANK1_chr10_89577988_89650242	0/0	t0022	1770	1	0	1	0	0	0	copy fasta	PANK1	chr10	89577988	89650242
PANK2_chr20_3884387_3934887	0/0	t0001	6625	46	13	5	21	2	5	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0002	6627	24	0	5	11	3	5	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0003	6640	24	3	6	13	0	2	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	1/0	t0004	6638	23	1	9	12	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0005	6641	17	1	5	9	0	2	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0006	6626	13	8	0	4	0	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0007	6637	12	1	0	10	0	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0008	6635	12	0	1	11	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0009	6627	10	0	0	10	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0010	6639	8	0	0	8	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0011	6643	8	2	4	0	1	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0012	6642	8	2	3	2	1	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0013	6638	7	0	1	6	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0014	6639	7	0	4	3	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0015	6607	7	7	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0016	6641	6	0	0	4	0	2	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0017	6628	5	0	1	1	0	3	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0018	6643	5	0	1	3	0	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0019	6639	5	2	1	1	1	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0020	6637	5	0	0	5	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0021	6636	5	1	0	4	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0022	6624	4	1	2	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0023	6638	4	0	0	4	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0024	6628	3	3	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0025	6642	3	3	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0026	6640	3	0	1	2	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0027	6637	3	1	1	1	0	0	copy fasta	PANK2	chr20	3884387	3934887