JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PANK2_chr20_3884387_3934887	0/0	t0028	6610	3	3	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0029	6626	3	1	1	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0030	6644	3	1	0	1	0	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0031	6642	3	0	1	2	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0032	6639	3	0	0	3	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0033	6607	3	3	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0034	6638	2	2	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0035	6639	2	0	0	2	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0036	6642	2	0	2	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0037	6641	2	0	0	0	0	2	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0038	6640	2	0	1	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0039	6636	2	0	0	2	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0040	6640	2	0	1	0	1	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0041	6644	2	0	0	0	2	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0042	6646	2	0	1	0	0	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/1	t0043	6642	2	0	1	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0044	6609	2	2	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0045	6641	2	1	0	0	0	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0046	6640	2	0	0	1	0	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0047	6643	2	0	0	2	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0048	6637	2	0	0	0	0	2	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0049	6634	2	2	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0050	6628	2	0	0	2	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0051	6643	2	0	0	1	0	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0052	6642	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0053	6639	1	0	1	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0054	6638	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0055	6637	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0056	6642	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0057	6637	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0058	6636	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0059	6625	1	0	0	0	0	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0060	6626	1	0	0	0	0	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0061	6625	1	0	0	0	0	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0062	6640	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0063	6640	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0064	6637	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0065	6639	1	0	1	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0066	6637	1	0	1	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0067	6638	1	0	1	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0068	6636	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0069	6635	1	0	1	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0070	6638	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0071	6639	1	0	1	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0072	6641	1	0	0	0	0	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0073	6627	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0074	6607	1	0	1	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0075	6609	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0076	6627	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0077	6625	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887