JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PANK2_chr20_3884387_3934887	0/0	t0078	6643	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0079	6642	1	0	0	0	0	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0080	6636	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0081	6635	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0082	6635	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0083	6634	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0084	6645	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0085	6644	1	0	0	0	0	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0086	6645	1	0	1	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0087	6632	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0088	6628	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0089	6627	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0090	6625	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0091	6626	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0092	6625	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0093	6626	1	0	0	0	0	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0094	6609	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0095	6642	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0096	6642	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0097	6641	1	0	1	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0098	6650	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0099	6641	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0100	6641	1	0	1	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0101	6640	1	0	0	0	1	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0102	6639	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0103	6640	1	0	1	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0104	6642	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0105	6642	1	0	0	0	0	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0106	6643	1	0	0	0	0	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0107	6641	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0108	6643	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0109	6642	1	0	0	0	0	1	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0110	6641	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0111	6638	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0112	6608	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0113	6607	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0114	6641	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0115	6635	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0116	6638	1	0	1	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0117	6640	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0118	6633	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0119	6636	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0120	6638	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0121	6637	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0122	6639	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0123	6640	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0124	6638	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0125	6636	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0126	6626	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0127	6625	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887