JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PANK2_chr20_3884387_3934887	0/0	t0128	6642	1	0	1	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0129	6641	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0130	6642	1	0	1	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0131	6640	1	0	1	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0132	6639	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0133	6636	1	0	1	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0134	6635	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0135	6636	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0136	6636	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0137	6635	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0138	6644	1	0	0	1	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0139	6625	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0140	6608	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0141	6606	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK2_chr20_3884387_3934887	0/0	t0142	6636	1	1	0	0	0	0	copy fasta	PANK2	chr20	3884387	3934887
PANK3_chr5_168543495_168584368	0/0	t0001	9161	83	3	17	54	0	9	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/1	t0002	9162	67	5	14	33	5	9	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	1/0	t0003	9162	62	12	7	31	6	5	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0004	9162	29	0	10	19	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0005	9163	27	1	9	10	4	3	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0006	9162	17	13	4	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0007	9162	16	1	0	12	0	3	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0008	9115	10	9	1	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0009	9162	9	9	0	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0010	9162	9	9	0	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0011	9162	7	7	0	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0012	9159	7	0	0	7	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0013	9162	7	4	3	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0014	9162	6	5	1	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0015	9162	5	3	2	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0016	9162	4	4	0	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0017	9145	3	0	0	1	0	2	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0018	9162	3	0	3	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0019	9162	3	0	0	3	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0020	9161	3	0	0	3	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0021	9162	3	2	1	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0022	9162	3	3	0	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0023	9162	2	2	0	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0024	9161	2	0	0	2	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0025	9162	2	1	1	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0026	9161	2	0	0	2	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0027	9161	1	0	0	0	0	1	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0028	9161	1	0	0	1	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0029	9162	1	0	0	1	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0030	9162	1	0	1	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0031	9162	1	0	1	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0032	9162	1	0	0	1	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0033	9162	1	0	0	0	0	1	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0034	9162	1	0	0	1	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0035	9162	1	0	0	0	0	1	copy fasta	PANK3	chr5	168543495	168584368