JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PANK3_chr5_168543495_168584368	0/0	t0036	9162	1	0	0	1	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0037	9162	1	0	1	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0038	9162	1	0	0	0	0	1	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0039	9162	1	0	0	1	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0040	9162	1	1	0	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0041	9162	1	0	0	1	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0042	9161	1	0	0	1	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0043	9161	1	1	0	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0044	9161	1	0	0	1	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0045	9163	1	0	0	0	0	1	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0046	9162	1	0	1	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0047	9163	1	1	0	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0048	9161	1	0	0	0	1	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0049	9161	1	1	0	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0050	9115	1	1	0	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK3_chr5_168543495_168584368	0/0	t0051	9163	1	0	1	0	0	0	copy fasta	PANK3	chr5	168543495	168584368
PANK4_chr1_2503537_2531596	0/1	t0001	320	250	46	48	112	9	34	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	t0002	322	105	11	16	67	3	8	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	t0003	324	43	37	4	0	0	2	copy fasta	PANK4	chr1	2503537	2531596
PANK4_chr1_2503537_2531596	0/0	t0004	322	1	0	0	1	0	0	copy fasta	PANK4	chr1	2503537	2531596
PANX1_chr11_94123841_94186968	0/1	t0001	1567	103	16	17	52	3	14	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0002	1567	63	11	21	23	4	4	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0003	1572	60	16	8	25	1	10	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0004	1572	43	7	3	29	1	3	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	1/0	t0005	1572	35	4	3	24	1	2	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0006	1567	30	2	14	11	0	3	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0007	1567	11	7	2	1	0	1	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0008	1567	10	10	0	0	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0009	1567	8	0	0	5	1	2	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0010	1572	7	0	0	7	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0011	1572	6	0	1	5	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0012	1567	6	0	0	4	1	1	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0013	1567	4	1	0	3	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0014	1567	3	2	0	1	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0015	1567	3	3	0	0	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0016	1572	2	0	2	0	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0017	1572	2	1	1	0	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0018	1567	2	0	0	2	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0019	1572	1	0	0	0	0	1	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0020	1582	1	1	0	0	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0021	1572	1	0	1	0	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0022	1572	1	0	0	0	0	1	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0023	1572	1	0	0	0	0	1	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0024	1567	1	1	0	0	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0025	1567	1	0	0	1	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0026	1567	1	0	0	1	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0027	1567	1	0	0	0	0	1	copy fasta	PANX1	chr11	94123841	94186968
PANX1_chr11_94123841_94186968	0/0	t0028	1567	1	0	1	0	0	0	copy fasta	PANX1	chr11	94123841	94186968
PANX2_chr22_50165731_50185295	1/1	t0001	1019	225	35	51	103	12	22	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0002	1019	88	8	13	54	3	10	copy fasta	PANX2	chr22	50165731	50185295