JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PANX2_chr22_50165731_50185295	0/0	t0003	1019	35	1	10	17	0	7	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0004	1019	14	0	3	8	0	3	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0005	1019	13	13	0	0	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0006	1019	10	9	1	0	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0007	1019	8	4	3	0	0	1	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0008	1019	8	7	1	0	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0009	1019	7	7	0	0	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0010	1019	6	3	1	1	0	1	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0011	1019	3	0	1	0	1	1	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0012	1019	3	2	0	1	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0013	1019	2	2	0	0	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0014	1019	2	2	0	0	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0015	1019	2	2	0	0	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0016	1019	1	1	0	0	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0017	1019	1	0	0	1	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0018	1019	1	1	0	0	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0019	1019	1	0	0	1	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0020	1019	1	0	0	0	0	1	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0021	1019	1	0	0	1	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0022	1019	1	0	0	1	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0023	1019	1	0	0	1	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0024	1019	1	0	0	0	0	1	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0025	1019	1	0	0	0	0	1	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0026	1019	1	1	0	0	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0027	1019	1	0	0	1	0	0	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0028	1019	1	0	0	0	0	1	copy fasta	PANX2	chr22	50165731	50185295
PANX2_chr22_50165731_50185295	0/0	t0029	1019	1	0	0	0	0	1	copy fasta	PANX2	chr22	50165731	50185295
PANX3_chr11_124606428_124625356	1/1	t0001	551	411	93	83	172	15	46	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	t0002	551	5	4	1	0	0	0	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	t0003	551	2	2	0	0	0	0	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	t0004	551	1	1	0	0	0	0	copy fasta	PANX3	chr11	124606428	124625356
PANX3_chr11_124606428_124625356	0/0	t0005	551	1	0	0	0	1	0	copy fasta	PANX3	chr11	124606428	124625356
PAOX_chr10_133374262_133396694	0/1	t0001	295	287	63	63	116	17	27	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	1/0	t0002	295	53	33	11	1	1	6	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	0/0	t0003	295	3	3	0	0	0	0	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	0/0	t0004	295	1	0	0	1	0	0	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	0/0	t0005	295	1	0	0	0	0	1	copy fasta	PAOX	chr10	133374262	133396694
PAOX_chr10_133374262_133396694	0/0	t0006	295	1	1	0	0	0	0	copy fasta	PAOX	chr10	133374262	133396694
PAPLN_chr14_73232506_73279623	1/1	t0001	2053	307	55	40	176	7	27	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0002	2053	21	13	7	0	0	1	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0003	2054	18	0	8	0	8	2	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0004	2053	13	0	3	4	0	6	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0005	2053	13	5	7	1	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0006	2053	8	7	1	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0007	2053	4	4	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0008	2053	3	0	3	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0009	2053	3	0	0	2	0	1	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0010	2053	3	0	3	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0011	2053	2	0	0	1	0	1	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0012	2053	2	1	0	0	0	1	copy fasta	PAPLN	chr14	73232506	73279623