JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAPLN_chr14_73232506_73279623	0/0	t0013	2053	2	1	0	1	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0014	2053	2	2	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0015	2053	2	0	2	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0016	2053	2	0	2	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0017	2053	1	0	0	0	0	1	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0018	2043	1	0	0	0	1	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0019	2054	1	1	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0020	2053	1	0	0	0	0	1	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0021	2053	1	0	0	0	0	1	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0022	2053	1	1	0	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0023	2054	1	0	0	1	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0024	2053	1	0	1	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0025	2053	1	0	1	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0026	2053	1	0	1	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0027	2053	1	0	0	1	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0028	2053	1	0	1	0	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPLN_chr14_73232506_73279623	0/0	t0029	2053	1	0	0	1	0	0	copy fasta	PAPLN	chr14	73232506	73279623
PAPOLA_chr14_96497382_96572116	1/1	t0001	2278	226	62	33	87	10	32	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLA_chr14_96497382_96572116	0/0	t0002	2278	40	5	7	18	4	6	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLA_chr14_96497382_96572116	0/0	t0003	2279	12	5	3	3	0	1	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLA_chr14_96497382_96572116	0/0	t0004	2278	6	6	0	0	0	0	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLA_chr14_96497382_96572116	0/0	t0005	2278	5	5	0	0	0	0	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLA_chr14_96497382_96572116	0/0	t0006	2278	4	0	0	0	0	4	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLA_chr14_96497382_96572116	0/0	t0007	2275	4	0	4	0	0	0	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLA_chr14_96497382_96572116	0/0	t0008	2279	3	3	0	0	0	0	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLA_chr14_96497382_96572116	0/0	t0009	2278	2	0	0	2	0	0	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLA_chr14_96497382_96572116	0/0	t0010	2279	1	0	0	0	0	1	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLA_chr14_96497382_96572116	0/0	t0011	2278	1	1	0	0	0	0	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLA_chr14_96497382_96572116	0/0	t0012	2278	1	0	0	1	0	0	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLA_chr14_96497382_96572116	0/0	t0013	2278	1	1	0	0	0	0	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLA_chr14_96497382_96572116	0/0	t0014	2278	1	0	0	1	0	0	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLA_chr14_96497382_96572116	0/0	t0015	2278	1	0	0	1	0	0	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLA_chr14_96497382_96572116	0/0	t0016	2278	1	0	1	0	0	0	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLA_chr14_96497382_96572116	0/0	t0017	2278	1	0	0	1	0	0	copy fasta	PAPOLA	chr14	96497382	96572116
PAPOLB_chr7_4852738_4867030	1/1	t0001	2380	202	13	41	121	8	17	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0002	2404	104	21	13	53	4	13	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0003	2404	35	7	3	17	2	6	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0004	2404	14	0	10	0	1	3	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0005	2380	12	0	0	12	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0006	2404	10	8	2	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0007	2404	8	7	1	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0008	2380	7	7	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0009	2380	5	5	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0010	2380	5	4	1	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0011	2380	4	0	3	0	0	1	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0012	2404	3	3	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0013	2404	3	3	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0014	2404	3	2	1	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0015	2404	2	0	0	0	0	2	copy fasta	PAPOLB	chr7	4852738	4867030
PAPOLB_chr7_4852738_4867030	0/0	t0016	2404	2	2	0	0	0	0	copy fasta	PAPOLB	chr7	4852738	4867030